RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 PLA2G3Q9NZ20 509 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 LOXL2Q9Y4K0 774 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 MED12LQ86YW9 2145 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 DNAJC13O75165 2243 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 TGOLN2O43493 480 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 RAMP3O60896 148 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 IL18BPO95998 194 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 MEF2BQ02080 365 aaPredicted RBP10.71□□□□□ -0.69
SHMT1-205ENST00000395684 ADIRFQ15847 76 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 ACSM6Q6P461 480 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 PACRGQ96M98 296 aaPredicted RBP10.71□□□□□ -0.69
SHMT1-205ENST00000395684 SMIM7Q9BQ49 75 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 PFN1P07737 140 aaKnown RBP10.71□□□□□ -0.69
SHMT1-205ENST00000395684 PMS2P11Q13670 270 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 FAM53AQ6NSI3 398 aaPredicted RBP10.71□□□□□ -0.69
SHMT1-205ENST00000395684 MOB1BQ7L9L4 216 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 C16orf82Q7Z2V1 217 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.71□□□□□ -0.69
SHMT1-205ENST00000395684 TMEM251Q8N6I4 163 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 SCCPDHQ8NBX0 429 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 OR10A7Q8NGE5 316 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 C14orf144Q96I85 54 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 C12orf49Q9H741 205 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 GP6Q9HCN6 339 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 MBNL3Q9NUK0 354 aaKnown RBP10.71□□□□□ -0.69
SHMT1-205ENST00000395684 B4GALT7Q9UBV7 327 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 NAT8Q9UHE5 227 aa10.71□□□□□ -0.69
SHMT1-205ENST00000395684 AHCTF1Q8WYP5 2266 aa10.71□□□□□ -0.7
SHMT1-205ENST00000395684 CLDN1O95832 211 aa10.71□□□□□ -0.7
SHMT1-205ENST00000395684 PDGFBP01127 241 aaPredicted RBP10.71□□□□□ -0.7
SHMT1-205ENST00000395684 IFNA1P01562 189 aa10.71□□□□□ -0.7
SHMT1-205ENST00000395684 TDGF1P13385 188 aa10.71□□□□□ -0.7
SHMT1-205ENST00000395684 ERVK11-1P61568 191 aa10.71□□□□□ -0.7
SHMT1-205ENST00000395684 TNFRSF9Q07011 255 aa10.71□□□□□ -0.7
SHMT1-205ENST00000395684 NCR3LG1Q68D85 454 aa10.71□□□□□ -0.7
SHMT1-205ENST00000395684 CYP2G1PQ6ZSU1 146 aa10.71□□□□□ -0.7
SHMT1-205ENST00000395684 NECAP1Q8NC96 275 aa10.71□□□□□ -0.7
SHMT1-205ENST00000395684 GATAD1Q8WUU5 269 aa10.71□□□□□ -0.7
SHMT1-205ENST00000395684 S100PBPQ96BU1 408 aa10.71□□□□□ -0.7
SHMT1-205ENST00000395684 CDX2Q99626 313 aaPredicted RBP10.71□□□□□ -0.7
SHMT1-205ENST00000395684 KIAA2026Q5HYC2 2103 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 CDIPTO14735 213 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 CER1O95813 267 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 OR1C1Q15619 314 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 TMEM241Q24JQ0 296 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 PEAR1Q5VY43 1037 aaPredicted RBP10.7□□□□□ -0.7
SHMT1-205ENST00000395684 UNQ6494/PRO21346Q6UXR6 183 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 CENPVQ7Z7K6 275 aaPredicted RBP10.7□□□□□ -0.7
SHMT1-205ENST00000395684 MDP1Q86V88 176 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 RPUSD4Q96CM3 377 aaKnown RBP10.7□□□□□ -0.7
SHMT1-205ENST00000395684 AGMATQ9BSE5 352 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 SMOC1Q9H4F8 434 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 PITPNC1Q9UKF7 332 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 WIPI2Q9Y4P8 454 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 DIDO1Q9BTC0 2240 aaKnown RBP10.7□□□□□ -0.7
SHMT1-205ENST00000395684 KRASP01116 189 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 GZMHP20718 246 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 IL2RGP31785 369 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 RPL23P62829 140 aaKnown RBP10.7□□□□□ -0.7
SHMT1-205ENST00000395684 ABHD17BQ5VST6 288 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 DEFB123Q8N688 67 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 PYGO2Q9BRQ0 406 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 SRD5A3Q9H8P0 318 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 SLC25A22Q9H936 323 aa10.7□□□□□ -0.7
SHMT1-205ENST00000395684 FAM90A26D6RGX4 464 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 KBTBD11O94819 623 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 SELEP16581 610 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 G6PCP35575 357 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 RPL30P62888 115 aaKnown RBP10.69□□□□□ -0.7
SHMT1-205ENST00000395684 COL10A1Q03692 680 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 BSXQ3C1V8 233 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 DNLZQ5SXM8 178 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 LINC00696Q6ZRV3 163 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 OR51G1Q8NGK1 321 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 C5orf30Q96GV9 206 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 GUCD1Q96NT3 240 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 PRO1933Q9H354 126 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 CLN8Q9UBY8 286 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 HSPB7Q9UBY9 170 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 TIMM9Q9Y5J7 89 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 CEBPDP49716 269 aaPredicted RBP10.69□□□□□ -0.7
SHMT1-205ENST00000395684 RTP5Q14D33 572 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 ALKBH6Q3KRA9 238 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 BCL2L2Q92843 193 aaPredicted RBP10.69□□□□□ -0.7
SHMT1-205ENST00000395684 RTL8AQ9BWD3 113 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 UFSP2Q9NUQ7 469 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 GAB2Q9UQC2 676 aa10.69□□□□□ -0.7
SHMT1-205ENST00000395684 PMS2P5A8MQ11 134 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 CELA3BP08861 270 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 P0C879 139 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 BRWD1-AS2P59051 145 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 ERVS71-1P61550 626 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 RPS16P62249 146 aaKnown RBP10.68□□□□□ -0.7
SHMT1-205ENST00000395684 ZNF816Q0VGE8 651 aaPredicted RBP10.68□□□□□ -0.7
SHMT1-205ENST00000395684 ZNF146Q15072 292 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 CLEC12BQ2HXU8 276 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 MCEMP1Q8IX19 187 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 TMEM183AQ8IXX5 376 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 OR1L1Q8NH94 360 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 WDYHV1Q96HA8 205 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms