RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 CCL13Q99616 98 aa20.93■□□□□ 0.94
SHOX2-201ENST00000389589 B9A039 149 aa20.93■□□□□ 0.94
SHOX2-201ENST00000389589 AKR1C2P52895 323 aa20.93■□□□□ 0.94
SHOX2-201ENST00000389589 VAMP2P63027 116 aa20.93■□□□□ 0.94
SHOX2-201ENST00000389589 LY6DQ14210 128 aa20.93■□□□□ 0.94
SHOX2-201ENST00000389589 MORN2Q502X0 79 aa20.93■□□□□ 0.94
SHOX2-201ENST00000389589 ZCCHC24Q8N2G6 241 aaKnown RBP20.93■□□□□ 0.94
SHOX2-201ENST00000389589 ZNF808Q8N4W9 903 aaPredicted RBP20.93■□□□□ 0.94
SHOX2-201ENST00000389589 AGMATQ9BSE5 352 aa20.93■□□□□ 0.94
SHOX2-201ENST00000389589 SDHAF2Q9NX18 166 aa20.93■□□□□ 0.94
SHOX2-201ENST00000389589 PSG11Q9UQ72 335 aa20.93■□□□□ 0.94
SHOX2-201ENST00000389589 RNF115Q9Y4L5 304 aa20.93■□□□□ 0.94
SHOX2-201ENST00000389589 NCOR2Q9Y618 2525 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 TRGV10A0A0A0MS01 117 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 A0A0G2JRQ6 117 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 MEX3AA1L020 520 aaKnown RBP20.92■□□□□ 0.94
SHOX2-201ENST00000389589 SELLP14151 372 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 TGIF2LYQ8IUE0 185 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 OR2C3Q8N628 320 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 CA5BP1Q8WTZ4 195 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 C5orf30Q96GV9 206 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 HSD17B10Q99714 261 aaKnown RBP20.92■□□□□ 0.94
SHOX2-201ENST00000389589 REG4Q9BYZ8 158 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 CHD8Q9HCK8 2581 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 MFSD2BA6NFX1 497 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 DEFB108AA8MXU0 73 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 WRBO00258 174 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 SSSCA1O60232 199 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 EPHA1P21709 976 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 RNF141Q8WVD5 230 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 NEUROG1Q92886 237 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 KCNJ16Q9NPI9 418 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 DCAF16Q9NXF7 216 aa20.92■□□□□ 0.94
SHOX2-201ENST00000389589 USF3Q68DE3 2245 aa20.91■□□□□ 0.94
SHOX2-201ENST00000389589 ATG12O94817 140 aa20.91■□□□□ 0.94
SHOX2-201ENST00000389589 IGKV1-5P01602 117 aa20.91■□□□□ 0.94
SHOX2-201ENST00000389589 LPAR6P43657 344 aa20.91■□□□□ 0.94
SHOX2-201ENST00000389589 LOXL3P58215 753 aa20.91■□□□□ 0.94
SHOX2-201ENST00000389589 LTC4SQ16873 150 aa20.91■□□□□ 0.94
SHOX2-201ENST00000389589 UBAC2Q8NBM4 344 aa20.91■□□□□ 0.94
SHOX2-201ENST00000389589 TMED6Q8WW62 240 aa20.91■□□□□ 0.94
SHOX2-201ENST00000389589 SLC25A31Q9H0C2 315 aa20.91■□□□□ 0.94
SHOX2-201ENST00000389589 LYRM2Q9NU23 88 aaPredicted RBP20.91■□□□□ 0.94
SHOX2-201ENST00000389589 ROS1P08922 2347 aa20.91■□□□□ 0.94
SHOX2-201ENST00000389589 ATRXP46100 2492 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 TMEM178BH3BS89 294 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 ST8SIA5O15466 376 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 FGF16O43320 207 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 CLDN1O95832 211 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 MAGT1Q9H0U3 335 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 SESN1Q9Y6P5 492 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 BORCS7-ASMTA0A0B4J1R7 106 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 KBTBD11-OT1A0A1B0GTJ5 212 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 I3L521 148 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 ITGB1BP1O14713 200 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 RPL30P62888 115 aaKnown RBP20.9■□□□□ 0.94
SHOX2-201ENST00000389589 DUX4L9Q6RFH8 374 aaPredicted RBP20.9■□□□□ 0.94
SHOX2-201ENST00000389589 FAM216BQ8N7L0 139 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 TCTEX1D2Q8WW35 142 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 SMIM3Q9BZL3 60 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 CLN8Q9UBY8 286 aa20.9■□□□□ 0.94
SHOX2-201ENST00000389589 PPIAL4EA0A075B759 164 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 PPIAL4DF5H284 164 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 PPIAL4FP0DN26 164 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 GRNP28799 593 aaKnown RBP20.89■□□□□ 0.93
SHOX2-201ENST00000389589 GPR12P47775 334 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 C17orf58Q2M2W7 97 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 MST1LQ2TV78 715 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 TMEM30BQ3MIR4 351 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 TOR2AQ5JU69 321 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 ARFGEF3Q5TH69 2177 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 HSD17B13Q7Z5P4 300 aaPredicted RBP20.89■□□□□ 0.93
SHOX2-201ENST00000389589 CORO2AQ92828 525 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 TMEM106BQ9NUM4 274 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 CACNG5Q9UF02 275 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 PPIAL4AQ9Y536 164 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 TMEM8BA6NDV4 472 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 CAV2P51636 162 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 EWSR1Q01844 656 aaKnown RBP eCLIP20.89■□□□□ 0.93
SHOX2-201ENST00000389589 Q3ZCU0 254 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 FGFRL1Q8N441 504 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 BARX1Q9HBU1 254 aaPredicted RBP20.89■□□□□ 0.93
SHOX2-201ENST00000389589 CISD1Q9NZ45 108 aaKnown RBP20.89■□□□□ 0.93
SHOX2-201ENST00000389589 MMP24Q9Y5R2 645 aa20.89■□□□□ 0.93
SHOX2-201ENST00000389589 ZNF729A6NN14 1252 aaPredicted RBP20.88■□□□□ 0.93
SHOX2-201ENST00000389589 SPAG16Q8N0X2 631 aa20.88■□□□□ 0.93
SHOX2-201ENST00000389589 EIF4E3Q8N5X7 224 aaKnown RBP20.88■□□□□ 0.93
SHOX2-201ENST00000389589 COA4Q9NYJ1 87 aa20.88■□□□□ 0.93
SHOX2-201ENST00000389589 LAMP3Q9UQV4 416 aa20.88■□□□□ 0.93
SHOX2-201ENST00000389589 TMPRSS2O15393 492 aa20.87■□□□□ 0.93
SHOX2-201ENST00000389589 CHST1O43916 411 aa20.87■□□□□ 0.93
SHOX2-201ENST00000389589 BTNL3Q6UXE8 466 aa20.87■□□□□ 0.93
SHOX2-201ENST00000389589 Q6ZRM9 215 aa20.87■□□□□ 0.93
SHOX2-201ENST00000389589 RAB40CQ96S21 281 aa20.87■□□□□ 0.93
SHOX2-201ENST00000389589 ARV1Q9H2C2 271 aa20.87■□□□□ 0.93
SHOX2-201ENST00000389589 LINC00574Q9H8X3 128 aa20.87■□□□□ 0.93
SHOX2-201ENST00000389589 GFOD1Q9NXC2 390 aa20.87■□□□□ 0.93
SHOX2-201ENST00000389589 ZZEF1O43149 2961 aa20.87■□□□□ 0.93
SHOX2-201ENST00000389589 FAM24AA6NFZ4 105 aa20.87■□□□□ 0.93
SHOX2-201ENST00000389589 KIAA1324LA8MWY0 1029 aaPredicted RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms