RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TAF1LQ8IZX4 1826 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 CACNA1GO43497 2377 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 A0A0G2JMM0 328 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 A0A1W2PPB8 328 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 KIR3DP1A8MWS1 328 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 AGBL5Q8NDL9 886 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 BAHD1Q8TBE0 780 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-203ENST00000353578 HOXA4Q00056 320 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-203ENST00000353578 C16orf52Q8NHV5 167 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 TSPAN2O60636 221 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 CCSMST1Q4G0I0 132 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 DOK4Q8TEW6 326 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 HIST1H2BLQ99880 126 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 DENND4AQ7Z401 1863 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 KCNMB2Q9Y691 235 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 PSME4Q14997 1843 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 ALOX12BO75342 701 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 MT-CO3P00414 261 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 CITED1Q99966 193 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 TRAV8-2A0A0B4J237 113 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 NKX2-6A6NCS4 301 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 SMAD4Q13485 552 aaKnown RBP11.05□□□□□ -0.64
COL6A3-203ENST00000353578 MUC15Q8N387 334 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 KIR2DL4Q99706 377 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 KCNE1BA0A087WTH5 132 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 KLK2P20151 261 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 CD40P25942 277 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 HEPN1Q6WQI6 88 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 ANKRD33Q7Z3H0 272 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 SCCPDHQ8NBX0 429 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 OR10AC1Q8NH08 325 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 SCNM1Q9BWG6 230 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 hADV38S2A0JD32 116 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 DHHO43323 396 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 IGLV3-25P01717 112 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 OR3A4PP47883 348 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 UCP3P55916 312 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 ATP5L2Q7Z4Y8 100 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 SPACA5Q96QH8 159 aa11.05□□□□□ -0.64
COL6A3-203ENST00000353578 IGLV3-16A0A075B6K0 115 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 IL36BQ9NZH7 164 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 NGFP01138 241 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 DCAF12L2Q5VW00 463 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 TAF15Q92804 592 aaKnown RBP eCLIP11.04□□□□□ -0.64
COL6A3-203ENST00000353578 SCRG1O75711 98 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 LYZL6O75951 148 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 PSG9Q00887 426 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 PLSCR4Q9NRQ2 329 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 PLXNA1Q9UIW2 1896 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 A0A1B0GWJ7 208 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 ARSAP15289 507 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 ACSF3Q4G176 576 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-203ENST00000353578 KIRREL2Q6UWL6 708 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 DNASE2BQ8WZ79 361 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 NCOR1O75376 2440 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 TMEM189A5PLL7 270 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 H0YL77 283 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 NRG2O14511 850 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-203ENST00000353578 GJB3O75712 270 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 ZNF735P0CB33 412 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-203ENST00000353578 OR1L8Q8NGR8 309 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 Q8WTZ3 238 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 FER1L6-AS2Q96M78 137 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 GOSR1O95249 250 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 HOXB3P14651 431 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-203ENST00000353578 GZMHP20718 246 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 MGAT2Q10469 447 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 AKIRIN1Q9H9L7 192 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-203ENST00000353578 ZNF324O75467 553 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-203ENST00000353578 OR8B2Q96RD0 313 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 BTAF1O14981 1849 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 GNG7O60262 68 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 ANKRD34AQ69YU3 496 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 YAE1D1Q9NRH1 226 aa11.04□□□□□ -0.64
COL6A3-203ENST00000353578 ZNF865P0CJ78 1059 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-203ENST00000353578 FRRS1LQ9P0K9 344 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 C2orf68Q2NKX9 166 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 TMEM25Q86YD3 366 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 OR52E5Q8NH55 327 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 K7ESF4 209 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 DSCR4P56555 118 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-203ENST00000353578 GAPTQ8N292 157 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 MRAP2Q96G30 205 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 HIGD1AQ9Y241 93 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 TRAV8-4A0A0B4J246 113 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 ASCL5Q7RTU5 278 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 SERGEFQ9UGK8 458 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 TRAV1-1A0A0B4J248 108 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 RBP4P02753 201 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 DCAF12Q5T6F0 453 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 OTPQ5XKR4 325 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 ASCL4Q6XD76 172 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 BOD1L2Q8IYS8 172 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 HIST3H2BBQ8N257 126 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-203ENST00000353578 H1FXQ92522 213 aaKnown RBP11.03□□□□□ -0.64
COL6A3-203ENST00000353578 CACNA1HO95180 2353 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 TRBV5-5A0A0J9YX44 114 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 ALG1L2C9J202 215 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms