RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SPRR3Q9UBC9 169 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 TCF20Q9UGU0 1960 aaKnown RBP12.75□□□□□ -0.37
COL17A1-201ENST00000353479 FAM78BQ5VT40 261 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 ZNF561Q8N587 486 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 C2CD4CQ8TF44 421 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 GPHA2Q96T91 129 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 PDLIM4P50479 330 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 PAX5Q02548 391 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 C4orf17Q53FE4 359 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 ZNF66Q6ZN08 573 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 PHYHIPLQ96FC7 376 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 SCMH1Q96GD3 660 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 MEGF10Q96KG7 1140 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 NPAS1Q99742 590 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 DUXBA0A1W2PPF3 345 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 Q8WTZ3 238 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 PARP11Q9NR21 331 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 TECRQ9NZ01 308 aaKnown RBP12.74□□□□□ -0.37
COL17A1-201ENST00000353479 LOC105371242A0A075B767 164 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 CDRT15L2A8MXV6 281 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 FAM106CPP0CH98 169 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 KCNMB1Q16558 191 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 ZNRF1Q8ND25 227 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 CDK2AP1O14519 115 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 MC5RP33032 325 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 GNG4P50150 75 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 PDPNQ86YL7 162 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 OR4P4Q8NGL7 312 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 OR4X1Q8NH49 305 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 H0Y980 276 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 SMIM17P0DL12 118 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 PTGDSP41222 190 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 NRN1LQ496H8 165 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 RNF2Q99496 336 aa12.74□□□□□ -0.37
COL17A1-201ENST00000353479 ALX4Q9H161 411 aaPredicted RBP12.74□□□□□ -0.37
COL17A1-201ENST00000353479 METTL1Q9UBP6 276 aaKnown RBP12.74□□□□□ -0.37
COL17A1-201ENST00000353479 TMEM14DPA8MWL7 114 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 TSTD3H0UI37 97 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 MBPP02686 304 aaPredicted RBP12.73□□□□□ -0.37
COL17A1-201ENST00000353479 NTF3P20783 257 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 C11orf91Q3C1V1 193 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 UQCC3Q6UW78 93 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 WASHC3Q9Y3C0 194 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 GPR179Q6PRD1 2367 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 SCO1O75880 301 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 NAGKQ9UJ70 344 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 GPR132Q9UNW8 380 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 RPL27AP46776 148 aaKnown RBP12.73□□□□□ -0.37
COL17A1-201ENST00000353479 ABHD12Q8N2K0 398 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 WDR31Q8NA23 367 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 LYPD3O95274 346 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 PSG5Q15238 335 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 C1QL2Q7Z5L3 287 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 ICE1Q9Y2F5 2266 aa12.73□□□□□ -0.37
COL17A1-201ENST00000353479 PGLYRP1O75594 196 aaPredicted RBP12.73□□□□□ -0.37
COL17A1-201ENST00000353479 RHBDL1O75783 438 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 FAM201AQ5SY85 155 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 ARTNQ5T4W7 220 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 RGP1Q92546 391 aaPredicted RBP12.72□□□□□ -0.37
COL17A1-201ENST00000353479 WDR61Q9GZS3 305 aaKnown RBP12.72□□□□□ -0.37
COL17A1-201ENST00000353479 TMEM222Q9H0R3 208 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 LEUTXA8MZ59 168 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 KCNAB3O43448 404 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 SS18L1O75177 396 aaPredicted RBP12.72□□□□□ -0.37
COL17A1-201ENST00000353479 TBR1Q16650 682 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 RHOVQ96L33 236 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 TMEM208Q9BTX3 173 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 C1QTNF5Q9BXJ0 243 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 Q0VFX4 171 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 OR8I2Q8N0Y5 310 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 MRPL13Q9BYD1 178 aaKnown RBP12.72□□□□□ -0.37
COL17A1-201ENST00000353479 TMEM106BQ9NUM4 274 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 RALYQ9UKM9 306 aaKnown RBP12.72□□□□□ -0.37
COL17A1-201ENST00000353479 HTR1DP28221 377 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 SSTR5P35346 364 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 B2MP61769 119 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 PSG7Q13046 419 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 TMEM241Q24JQ0 296 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 TEPPQ6URK8 271 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 SLC24A4Q8NFF2 622 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 ZDHHC11Q9H8X9 412 aa12.72□□□□□ -0.37
COL17A1-201ENST00000353479 C10orf113Q5VZT2 155 aa12.71□□□□□ -0.37
COL17A1-201ENST00000353479 SLC35B3Q9H1N7 401 aa12.71□□□□□ -0.37
COL17A1-201ENST00000353479 TMEM167BQ9NRX6 74 aa12.71□□□□□ -0.37
COL17A1-201ENST00000353479 FAM103A1Q9BTL3 118 aaKnown RBP12.71□□□□□ -0.37
COL17A1-201ENST00000353479 SRSF6Q13247 344 aaKnown RBP12.71□□□□□ -0.37
COL17A1-201ENST00000353479 DCAF12L2Q5VW00 463 aa12.71□□□□□ -0.37
COL17A1-201ENST00000353479 P2RX4Q99571 388 aa12.71□□□□□ -0.37
COL17A1-201ENST00000353479 IGHV3OR16-10A0A075B7F0 116 aa12.71□□□□□ -0.38
COL17A1-201ENST00000353479 SPINK4O60575 86 aa12.71□□□□□ -0.38
COL17A1-201ENST00000353479 ACACAQ13085 2346 aa12.71□□□□□ -0.38
COL17A1-201ENST00000353479 RALGAPA1Q6GYQ0 2036 aa12.71□□□□□ -0.38
COL17A1-201ENST00000353479 LIPFP07098 398 aa12.71□□□□□ -0.38
COL17A1-201ENST00000353479 ASPHD2Q6ICH7 369 aa12.71□□□□□ -0.38
COL17A1-201ENST00000353479 RSRP1Q9BUV0 290 aa12.71□□□□□ -0.38
COL17A1-201ENST00000353479 JPT1Q9UK76 154 aa12.71□□□□□ -0.38
COL17A1-201ENST00000353479 ZNF729A6NN14 1252 aaPredicted RBP12.7□□□□□ -0.38
COL17A1-201ENST00000353479 H0YL77 283 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 NPIPB7O75200 414 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 BMPERQ8N8U9 685 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms