RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 DOCK10Q96BY6 2186 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 CTXND1A0A1B0GTU2 59 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 CD300LBA8K4G0 201 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 OPN1LWP04000 364 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 RPLP1P05386 114 aaKnown RBP13.5□□□□□ -0.25
HMGA1-202ENST00000347617 TUBG1P23258 451 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 TMEM267Q0VDI3 215 aaPredicted RBP13.5□□□□□ -0.25
HMGA1-202ENST00000347617 BRICD5Q6PL45 260 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 TMPRSS7Q7RTY8 843 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 CCL28Q9NRJ3 127 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 ATXN7O15265 892 aaPredicted RBP13.49□□□□□ -0.25
HMGA1-202ENST00000347617 GZMHP20718 246 aa13.49□□□□□ -0.25
HMGA1-202ENST00000347617 ERVS71-1P61550 626 aa13.49□□□□□ -0.25
HMGA1-202ENST00000347617 HERPUD1Q15011 391 aa13.49□□□□□ -0.25
HMGA1-202ENST00000347617 ZNF573Q86YE8 665 aa13.49□□□□□ -0.25
HMGA1-202ENST00000347617 ZNF295-AS1Q8N0V1 137 aa13.49□□□□□ -0.25
HMGA1-202ENST00000347617 CPT1CQ8TCG5 803 aa13.49□□□□□ -0.25
HMGA1-202ENST00000347617 PCGF1Q9BSM1 259 aa13.49□□□□□ -0.25
HMGA1-202ENST00000347617 DEPPQ9NTK1 212 aa13.49□□□□□ -0.25
HMGA1-202ENST00000347617 NAGKQ9UJ70 344 aa13.49□□□□□ -0.25
HMGA1-202ENST00000347617 G3V3Y1 287 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 MDKP21741 143 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-202ENST00000347617 CASP6P55212 293 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 UBE2NP61088 152 aaKnown RBP13.48□□□□□ -0.25
HMGA1-202ENST00000347617 FGF12P61328 243 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 ZNF611Q8N823 705 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 OR2M7Q8NG81 312 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 MRPL30Q8TCC3 161 aaKnown RBP13.48□□□□□ -0.25
HMGA1-202ENST00000347617 TAF15Q92804 592 aaKnown RBP eCLIP13.48□□□□□ -0.25
HMGA1-202ENST00000347617 SPSB4Q96A44 273 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 ZNF385AQ96PM9 386 aaKnown RBP13.48□□□□□ -0.25
HMGA1-202ENST00000347617 PLK3Q9H4B4 646 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 B4GALT7Q9UBV7 327 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 FUT9Q9Y231 359 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 IGKV1D-13A0A0B4J2D9 117 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 A0A0J9YW62 118 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 DLEU1O43261 78 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 SCGB1D1O95968 90 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 OR4A8P0C604 315 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 IGKV1-13P0DP09 117 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 FGF8P55075 233 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-202ENST00000347617 SPINK14Q6IE38 97 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 NEIL1Q96FI4 390 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-202ENST00000347617 C20orf144Q9BQM9 153 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 PARLQ9H300 379 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 VSIRQ9H7M9 311 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 GOLT1BQ9Y3E0 138 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 OR2W1Q9Y3N9 320 aa13.48□□□□□ -0.25
HMGA1-202ENST00000347617 A0A0G2JMM0 328 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 A0A1W2PPB8 328 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 A0A1W2PPQ1 181 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 A0A1W2PRS3 328 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 KIR3DP1A8MWS1 328 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 NPIPB11E5RHQ5 1161 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 GYPAP02724 150 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 CD55P08174 381 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 ZNF25P17030 456 aaPredicted RBP13.47□□□□□ -0.25
HMGA1-202ENST00000347617 GFRA1P56159 465 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 PAFAH1B2P68402 229 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 OR1C1Q15619 314 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 SSX7Q7RTT5 188 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 TMEM37Q8WXS4 190 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 PIGCQ92535 297 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 TMEM38BQ9NVV0 291 aa13.47□□□□□ -0.25
HMGA1-202ENST00000347617 KLF13Q9Y2Y9 288 aaPredicted RBP13.47□□□□□ -0.25
HMGA1-202ENST00000347617 TNFSF11O14788 317 aa13.46□□□□□ -0.25
HMGA1-202ENST00000347617 SOX15O60248 233 aa13.46□□□□□ -0.25
HMGA1-202ENST00000347617 SCTP09683 121 aa13.46□□□□□ -0.25
HMGA1-202ENST00000347617 RFPL3SP0C7P2 107 aa13.46□□□□□ -0.25
HMGA1-202ENST00000347617 RTP5Q14D33 572 aa13.46□□□□□ -0.25
HMGA1-202ENST00000347617 ZNF774Q6NX45 483 aa13.46□□□□□ -0.25
HMGA1-202ENST00000347617 TEX38Q6PEX7 206 aa13.46□□□□□ -0.25
HMGA1-202ENST00000347617 GGNQ86UU5 652 aa13.46□□□□□ -0.25
HMGA1-202ENST00000347617 TRAV9-1A0A075B6T8 112 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 DEGS1O15121 323 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 SP1P08047 785 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 GDF1P27539 372 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 OR3A1P47881 315 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 TNFSF10P50591 281 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 CARD18P57730 90 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 SLC38A11Q08AI6 406 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 YRDCQ86U90 279 aaKnown RBP13.45□□□□□ -0.26
HMGA1-202ENST00000347617 MKXQ8IYA7 352 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 ZIC4Q8N9L1 334 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 NECAP1Q8NC96 275 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 MDS2Q8NDY4 140 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 RPUSD4Q96CM3 377 aaKnown RBP13.45□□□□□ -0.26
HMGA1-202ENST00000347617 LIN7CQ9NUP9 197 aaKnown RBP13.45□□□□□ -0.26
HMGA1-202ENST00000347617 POLR3KQ9Y2Y1 108 aaPredicted RBP13.45□□□□□ -0.26
HMGA1-202ENST00000347617 EP300Q09472 2414 aaPredicted RBP13.45□□□□□ -0.26
HMGA1-202ENST00000347617 PINLYPA6NC86 204 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 H3BP45 60 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 KLRC4-KLRK1H3BQV0 150 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 G0S2P27469 103 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 RPL15P61313 204 aaKnown RBP13.45□□□□□ -0.26
HMGA1-202ENST00000347617 PPP1CBP62140 327 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 FOXL1Q12952 345 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 DAZAP2Q15038 168 aaPredicted RBP13.45□□□□□ -0.26
HMGA1-202ENST00000347617 ZNF324BQ6AW86 544 aaPredicted RBP13.45□□□□□ -0.26
HMGA1-202ENST00000347617 WDYHV1Q96HA8 205 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms