RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 SLC38A11Q08AI6 406 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 C10orf128Q5T292 105 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 CARFQ8N187 725 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 ZNF439Q8NDP4 499 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 PINX1Q96BK5 328 aaKnown RBP10.19□□□□□ -0.78
USP1-201ENST00000339950 BOD1Q96IK1 185 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 RTL8AQ9BWD3 113 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 ARV1Q9H2C2 271 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 TMEM100Q9NV29 134 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 U3KQA8 63 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 OTOGLQ3ZCN5 2332 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 DANCRP0C864 163 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 DTYMKP23919 212 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 SLC35B1P78383 322 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 SRPXP78539 464 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 EIF3IQ13347 325 aaKnown RBP10.18□□□□□ -0.78
USP1-201ENST00000339950 OR5I1Q13606 314 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 MSI2Q96DH6 328 aaKnown RBP10.18□□□□□ -0.78
USP1-201ENST00000339950 PCED1AQ9H1Q7 454 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 FUT9Q9Y231 359 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 M0R1X1 148 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 SH2D1BO14796 132 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 TOX4O94842 621 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 PAX6P26367 422 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 GGNQ86UU5 652 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 GATAD1Q8WUU5 269 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 OR4C12Q96R67 309 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 RYDENQ9NUL5 291 aaKnown RBP10.18□□□□□ -0.78
USP1-201ENST00000339950 CBY1Q9Y3M2 126 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 TRBV6-7A0A0A0MS04 114 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 LNP1A1A4G5 178 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 M0R1B8 84 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 TMEM50AO95807 157 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 OR2H2O95918 312 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 ZNF766Q5HY98 468 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 FFAR4Q5NUL3 377 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 KCNIP4Q6PIL6 250 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 DEFB124Q8NES8 71 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 STRAPQ9Y3F4 350 aaKnown RBP10.18□□□□□ -0.78
USP1-201ENST00000339950 OR2W1Q9Y3N9 320 aa10.18□□□□□ -0.78
USP1-201ENST00000339950 SEC11BP0C7V7 166 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 FAM3BP58499 235 aaPredicted RBP10.17□□□□□ -0.78
USP1-201ENST00000339950 HLA-DRB3P79483 266 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 RPL19P84098 196 aaKnown RBP10.17□□□□□ -0.78
USP1-201ENST00000339950 OR8B8Q15620 311 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 GNPNAT1Q96EK6 184 aaPredicted RBP10.17□□□□□ -0.78
USP1-201ENST00000339950 WDR54Q9H977 334 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 PARD6AQ9NPB6 346 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 SLC25A6P12236 298 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 PSMB3P49720 205 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 TMEM211Q6ICI0 200 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 TAAR9Q96RI9 348 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 SF3B5Q9BWJ5 86 aaKnown RBP10.17□□□□□ -0.78
USP1-201ENST00000339950 ENY2Q9NPA8 101 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 PGPEP1LA6NFU8 196 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 ZNF737O75373 536 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 SRSF4Q08170 494 aaKnown RBP10.17□□□□□ -0.78
USP1-201ENST00000339950 LYPD6Q86Y78 171 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 GALMQ96C23 342 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 MS4A10Q96PG2 267 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 CHRNA10Q9GZZ6 450 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 Q9N2K0 584 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 FOXD3Q9UJU5 478 aaPredicted RBP10.17□□□□□ -0.78
USP1-201ENST00000339950 TP53TG5Q9Y2B4 290 aa10.17□□□□□ -0.78
USP1-201ENST00000339950 PAGE4O60829 102 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 WISP2O76076 250 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 TRGC1P0CF51 173 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 GLIPR1P48060 266 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 Q6ZRM9 215 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 OR10P1Q8NGE3 313 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 AP1S3Q96PC3 154 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 TM2D1Q9BX74 207 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 TRAV38-1A0A0B4J264 116 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.16□□□□□ -0.78
USP1-201ENST00000339950 NDUFA2O43678 99 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 GAPDHP04406 335 aaKnown RBP10.16□□□□□ -0.78
USP1-201ENST00000339950 CRYGSP22914 178 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 ARR3P36575 388 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 FGF12P61328 243 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 OR4A16Q8NH70 328 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 TAAR3PQ9P1P4 343 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 ADAMTS9Q9P2N4 1935 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 LRP5LA4QPB2 252 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 NPIPB13A6NJU9 1138 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 NPIPB4C9JG80 1138 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 RAMP3O60896 148 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 THBS3P49746 956 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 PKIAP61925 76 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 CEACAM21Q3KPI0 293 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 ZCCHC24Q8N2G6 241 aaKnown RBP10.16□□□□□ -0.78
USP1-201ENST00000339950 PLPPR1Q8TBJ4 325 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 PLEKHA3Q9HB20 300 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 RNF24Q9Y225 148 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 ZNF729A6NN14 1252 aaPredicted RBP10.16□□□□□ -0.78
USP1-201ENST00000339950 TCF21O43680 179 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 ZG16O60844 167 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 CD5P06127 495 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 RPS23P62266 143 aaKnown RBP10.16□□□□□ -0.78
USP1-201ENST00000339950 SPNS3Q6ZMD2 512 aa10.16□□□□□ -0.78
USP1-201ENST00000339950 SCCPDHQ8NBX0 429 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms