RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 FNDC10F2Z333 226 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 APOMO95445 188 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 ORM1P02763 201 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 VDAC1P21796 283 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 IER3P46695 156 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 RPL27P61353 136 aaKnown RBP3.56□□□□□ -1.84
NEDD4-201ENST00000338963 FUT7Q11130 342 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 AGERQ15109 404 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 PHLDA2Q53GA4 152 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 SSX8Q7RTT4 187 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 OR10AC1Q8NH08 325 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 SERTAD4Q9NUC0 356 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 ARFGEF2Q9Y6D5 1785 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 TRAV36DV7A0A075B6V5 113 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 TRGV10A0A0A0MS01 117 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 A0A1W2PS18 150 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 TMEM14DPA8MWL7 114 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 SYNGR3O43761 229 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 ID1P41134 155 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 SSR2P43308 183 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 C2orf27AQ580R0 203 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 SLC25A47Q6Q0C1 308 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 ZNF808Q8N4W9 903 aaPredicted RBP3.56□□□□□ -1.84
NEDD4-201ENST00000338963 OR9G1Q8NH87 305 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 WIPF2Q8TF74 440 aaPredicted RBP3.56□□□□□ -1.84
NEDD4-201ENST00000338963 NKD1Q969G9 470 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 ADAT3Q96EY9 351 aaPredicted RBP3.56□□□□□ -1.84
NEDD4-201ENST00000338963 PAAF1Q9BRP4 392 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 SLC25A2Q9BXI2 301 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 CLEC7AQ9BXN2 247 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 SIGLEC9Q9Y336 463 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 A0A1W2PRD5 423 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 A0A1W2PRF3 423 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 A0A1W2PRM7 423 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 M0QXV9 152 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 CEACAM5P06731 702 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 FBXO45P0C2W1 286 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 ZNF823P16415 610 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 NANOS3P60323 173 aaKnown RBP3.56□□□□□ -1.84
NEDD4-201ENST00000338963 MRPS6P82932 125 aaKnown RBP3.56□□□□□ -1.84
NEDD4-201ENST00000338963 EDDM3AQ14507 147 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 KIR3DS1Q14943 382 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 TMEM78Q5T7P6 136 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 GLIPR1L1Q6UWM5 242 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 TMEM25Q86YD3 366 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 TMEM54Q969K7 222 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 PERPQ96FX8 193 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 NRTNQ99748 197 aa3.56□□□□□ -1.84
NEDD4-201ENST00000338963 SSBP3Q9BWW4 388 aaPredicted RBP3.56□□□□□ -1.84
NEDD4-201ENST00000338963 CSDC2Q9Y534 153 aaKnown RBP3.56□□□□□ -1.84
NEDD4-201ENST00000338963 A0A0B4J2E0 115 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 A0A1B0GWB2 263 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 A0A1B0GX12 115 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 A0A1W2PP11 408 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 MPIG6BO95866 241 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 IFITM1P13164 125 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 SUPT4H1P63272 117 aaKnown RBP3.55□□□□□ -1.84
NEDD4-201ENST00000338963 LY6DQ14210 128 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 CEACAM16Q2WEN9 425 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 RHBDD2Q6NTF9 364 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 RNASEKQ6P5S7 137 aaKnown RBP3.55□□□□□ -1.84
NEDD4-201ENST00000338963 NUP43Q8NFH3 380 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 OTOSQ8NHW6 89 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 TMEM171Q8WVE6 324 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 APOBEC3DQ96AK3 386 aaPredicted RBP3.55□□□□□ -1.84
NEDD4-201ENST00000338963 FAM90A26D6RGX4 464 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 TNFSF11O14788 317 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 PRSS56P0CW18 603 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 TLE1Q04724 770 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 PLP2Q04941 152 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 CDRT4Q8N9R6 151 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 ZNF296Q8WUU4 475 aaPredicted RBP3.55□□□□□ -1.84
NEDD4-201ENST00000338963 TMEM147Q9BVK8 224 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 WNT10AQ9GZT5 417 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 CHRNA10Q9GZZ6 450 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 R3HDMLQ9H3Y0 253 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 C5AR2Q9P296 337 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 MRPS17Q9Y2R5 130 aaKnown RBP3.55□□□□□ -1.84
NEDD4-201ENST00000338963 C21orf140B9A014 251 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 LEPROTL1O95214 131 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 CRYGBP07316 175 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 IGFBP2P18065 325 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 DYNLT3P51808 116 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 DLX6P56179 175 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 FAM110CQ1W6H9 321 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 ATG4DQ86TL0 474 aaPredicted RBP3.55□□□□□ -1.84
NEDD4-201ENST00000338963 Q8N976 141 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 FADS6Q8N9I5 356 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 FAM174AQ8TBP5 190 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 CLDN23Q96B33 292 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 KCNK17Q96T54 332 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 OSTCQ9NRP0 149 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 VPREB3Q9UKI3 123 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 CCDC88AQ3V6T2 1871 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 LOC107986453A0A1B0GWG9 222 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 A0A1B0GX51 115 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 GJB3O75712 270 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 VSIG8P0DPA2 414 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 TAS2R45P59539 299 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 PSG5Q15238 335 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms