RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 B4DEV8 164 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 PPYP01298 95 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 NKX2-1P43699 371 aaPredicted RBP13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 FGF8P55075 233 aaPredicted RBP13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 TLE1Q04724 770 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 MKXQ8IYA7 352 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 OR10A7Q8NGE5 316 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 VSIRQ9H7M9 311 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 PLEKHF2Q9H8W4 249 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 SDF2L1Q9HCN8 221 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 FZR1Q9UM11 496 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 NBASA2RRP1 2371 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 DTYMKP23919 212 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 ALKBH6Q3KRA9 238 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 ZNF391Q9UJN7 358 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 ANKRD30BLA7E2S9 258 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 HSPA12AO43301 675 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 C20orf204Q6ZNR8 217 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 COLCA1Q6ZS62 124 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 SSX7Q7RTT5 188 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 MDS2Q8NDY4 140 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 LYRM2Q9NU23 88 aaPredicted RBP13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 TMEM242Q9NWH2 141 aa13.2□□□□□ -0.3
SHROOM1-201ENST00000319854 EIF3IQ13347 325 aaKnown RBP13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 CEACAM21Q3KPI0 293 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 FDCSPQ8NFU4 85 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 SPSB4Q96A44 273 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 TRIB1Q96RU8 372 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 PPP1R14DQ9NXH3 145 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 UBE2J1Q9Y385 318 aaPredicted RBP13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 IGKV1D-13A0A0B4J2D9 117 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 A6NNC1 897 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 CA11O75493 328 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 AGFG2O95081 481 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 IGKV1-13P0DP09 117 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 TUBG1P23258 451 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 LCN15Q6UWW0 184 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 ASCL4Q6XD76 172 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 RBMXL1Q96E39 390 aaKnown RBP13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 OR2J1Q9GZK6 312 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 APC2O95996 2303 aa13.19□□□□□ -0.3
SHROOM1-201ENST00000319854 PAX5Q02548 391 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 THNSL2Q86YJ6 484 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 WDYHV1Q96HA8 205 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 LINC00470Q9BZP3 86 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 CUL9Q8IWT3 2517 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 SIRPB1O00241 398 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 TFF1P04155 84 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 TK1P04183 234 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 GRPP07492 148 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 WT1P19544 449 aaPredicted RBP13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 RNPS1Q15287 305 aaKnown RBP13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 IZUMO4Q1ZYL8 232 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 GAPTQ8N292 157 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 MARCH11A6NNE9 402 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 TRDCB7Z8K6 153 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 DFFBO76075 338 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 NPSP0C0P6 89 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 ARR3P36575 388 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 TLE4Q04727 773 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 FBXW9Q5XUX1 488 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 ZNF66Q6ZN08 573 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 LRP11Q86VZ4 500 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 OR51H1Q8NH63 302 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 TMEM37Q8WXS4 190 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 SRD5A3Q9H8P0 318 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 LAMP3Q9UQV4 416 aa13.18□□□□□ -0.3
SHROOM1-201ENST00000319854 TNRC6AQ8NDV7 1962 aaKnown RBP13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 C3orf85A0A1B0GTC6 90 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 ADAM20O43506 726 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 OPN1MWP04001 364 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 PFN1P07737 140 aaKnown RBP13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 OPN1MW2P0DN77 364 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 OPN1MW3P0DN78 364 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 GNRHRP30968 328 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 TDGF1P3P51864 188 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 GNB2P62879 340 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 ZNF726P1Q15940 193 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 ZNF818PQ6ZRF7 136 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 RSG1Q9BU20 258 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 CCL28Q9NRJ3 127 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 RPRMQ9NS64 109 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 H3BP45 60 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 GCGP01275 180 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 MBP02144 154 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 PMS2P11Q13670 270 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 HNF4GQ14541 408 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 HERPUD1Q15011 391 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 ANKRD39Q53RE8 183 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 TBC1D26Q86UD7 250 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 ELOVL1Q9BW60 279 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 CBY1Q9Y3M2 126 aa13.17□□□□□ -0.3
SHROOM1-201ENST00000319854 MPPED1O15442 326 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 CHST1O43916 411 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 CEBPDP49716 269 aaPredicted RBP13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 ELLP55199 621 aaPredicted RBP13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 FGF12P61328 243 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 BTNL3Q6UXE8 466 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 C16orf82Q7Z2V1 217 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 OR1K1Q8NGR3 316 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms