RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 PCM1Q15154 2024 aa15.03■□□□□ -0
SYNPO-201ENST00000307662 SHISA7A6NL88 538 aa15.03■□□□□ -0
SYNPO-201ENST00000307662 SCTP09683 121 aa15.03■□□□□ -0
SYNPO-201ENST00000307662 CCL3P10147 92 aa15.03■□□□□ -0
SYNPO-201ENST00000307662 ZNF488Q96MN9 340 aa15.03■□□□□ -0
SYNPO-201ENST00000307662 RNF7Q9UBF6 113 aa15.03■□□□□ -0
SYNPO-201ENST00000307662 LIFP15018 202 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 IL11P20809 199 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 OR2Y1Q8NGV0 311 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 TMEM45BQ96B21 275 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 GPR146Q96CH1 333 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 COL4A5P29400 1685 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 PGLYRP1O75594 196 aaPredicted RBP15.02■□□□□ -0
SYNPO-201ENST00000307662 CEACAM21Q3KPI0 293 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 HIGD1AQ9Y241 93 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.02■□□□□ -0
SYNPO-201ENST00000307662 IGKV1-8A0A0C4DH67 115 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 TMEM238LA0A1B0GVL6 79 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 A6NJY4 79 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 MOSPD3O75425 235 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 EPHA8P29322 1005 aaPredicted RBP15.02■□□□□ -0
SYNPO-201ENST00000307662 EFNB1P98172 346 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 BHLHA15Q7RTS1 189 aaPredicted RBP15.02■□□□□ -0
SYNPO-201ENST00000307662 SLC25A40Q8TBP6 338 aa15.02■□□□□ -0
SYNPO-201ENST00000307662 FOLR2P14207 255 aa15.02□□□□□ -0.01
SYNPO-201ENST00000307662 COA4Q9NYJ1 87 aa15.02□□□□□ -0.01
SYNPO-201ENST00000307662 FHITP49789 147 aa15.02□□□□□ -0.01
SYNPO-201ENST00000307662 HIKESHIQ53FT3 197 aa15.02□□□□□ -0.01
SYNPO-201ENST00000307662 TEX30Q5JUR7 227 aa15.02□□□□□ -0.01
SYNPO-201ENST00000307662 HES3Q5TGS1 186 aa15.02□□□□□ -0.01
SYNPO-201ENST00000307662 FAM157AC9JC47 383 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 PPIHO43447 177 aaKnown RBP15.01□□□□□ -0.01
SYNPO-201ENST00000307662 MGPP08493 103 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 ERGP11308 486 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 LGALS7P47929 136 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 QTRT1Q9BXR0 403 aaKnown RBP15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A10PA6NDY2 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A18PA6NE21 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A16PA6NEW6 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A20PA6NIJ5 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A8PA6NJQ4 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A7PA6NKC0 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A22PA8MWA6 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A12PA8MX19 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A5PA8MXJ8 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A23PA8MXZ1 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 M0R3E3 92 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A15PP0C7V4 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A13PP0C7W8 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A14PP0C7W9 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A24PP0C7X0 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 ZNF841Q6ZN19 808 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 LY75O60449 1722 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 FAM90A26D6RGX4 464 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 KIR2DL1P43626 348 aaPredicted RBP15.01□□□□□ -0.01
SYNPO-201ENST00000307662 MUC15Q8N387 334 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 HYPMO75409 117 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 MT-CO3P00414 261 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 KIR2DL2P43627 348 aaPredicted RBP15.01□□□□□ -0.01
SYNPO-201ENST00000307662 OR8B3Q8NGG8 313 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 KCNK17Q96T54 332 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 LHX9Q9NQ69 397 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 NPTNQ9Y639 398 aa15.01□□□□□ -0.01
SYNPO-201ENST00000307662 DNASE2O00115 360 aaPredicted RBP15□□□□□ -0.01
SYNPO-201ENST00000307662 KBTBD11O94819 623 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 ZNF645Q8N7E2 425 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 CLEC1BQ9P126 229 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 TRBV9A0A0B4J1U6 114 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 SRIP30626 198 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 PQLC2Q6ZP29 291 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 PARLQ9H300 379 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 HOXA4Q00056 320 aaPredicted RBP15□□□□□ -0.01
SYNPO-201ENST00000307662 TMEM187Q14656 261 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 WFIKKN1Q96NZ8 548 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 MAGEA5P43359 124 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 COL10A1Q03692 680 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 ZNF506Q5JVG8 444 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 CFHR5Q9BXR6 569 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 FAM206AQ9NX38 181 aa15□□□□□ -0.01
SYNPO-201ENST00000307662 ZNF708P17019 499 aa14.99□□□□□ -0.01
SYNPO-201ENST00000307662 TWIST1Q15672 202 aa14.99□□□□□ -0.01
SYNPO-201ENST00000307662 SPINT1O43278 529 aa14.99□□□□□ -0.01
SYNPO-201ENST00000307662 TGIF1Q15583 401 aa14.99□□□□□ -0.01
SYNPO-201ENST00000307662 C3AR1Q16581 482 aa14.99□□□□□ -0.01
SYNPO-201ENST00000307662 ZDHHC16Q969W1 377 aa14.99□□□□□ -0.01
SYNPO-201ENST00000307662 SHISA3A0PJX4 238 aa14.99□□□□□ -0.01
SYNPO-201ENST00000307662 PRF1P14222 555 aa14.99□□□□□ -0.01
SYNPO-201ENST00000307662 PSG4Q00888 419 aa14.99□□□□□ -0.01
SYNPO-201ENST00000307662 MAP1BP46821 2468 aaKnown RBP14.99□□□□□ -0.01
SYNPO-201ENST00000307662 TMEM189A5PLL7 270 aa14.99□□□□□ -0.01
SYNPO-201ENST00000307662 MIC13Q5XKP0 118 aa14.99□□□□□ -0.01
SYNPO-201ENST00000307662 DNLZQ5SXM8 178 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 C19orf48Q6RUI8 117 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 CDX2Q99626 313 aaPredicted RBP14.98□□□□□ -0.01
SYNPO-201ENST00000307662 ZNF256Q9Y2P7 627 aaPredicted RBP14.98□□□□□ -0.01
SYNPO-201ENST00000307662 FGFRL1Q8N441 504 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 LSM10Q969L4 123 aaKnown RBP14.98□□□□□ -0.01
SYNPO-201ENST00000307662 ASCC3Q8N3C0 2202 aaKnown RBP14.98□□□□□ -0.01
SYNPO-201ENST00000307662 GRIFINA4D1Z8 144 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 AGFG2O95081 481 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms