RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SLC35B3Q9H1N7 401 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 KCNJ16Q9NPI9 418 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 DUSP13Q9UII6 198 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 SLC25A15Q9Y619 301 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 COLCA2A8K830 154 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 EGR1P18146 543 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 LINC00205P59089 165 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 HAGHQ16775 308 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 AKR1C8PQ5T2L2 129 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 CD177Q8N6Q3 437 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 C14orf79Q96F83 325 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 C7orf77A4D0Y5 90 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 MBNL2Q5VZF2 373 aaKnown RBP16.8■□□□□ 0.28
VPS53-201ENST00000291074 IGF2-ASQ6U949 168 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 SMCO4Q9NRQ5 59 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 PIGBOS1A0A0B4J2F0 54 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 MBD3L4A6NDZ8 208 aaPredicted RBP16.8■□□□□ 0.28
VPS53-201ENST00000291074 MBD3L3A6NE82 208 aaPredicted RBP16.8■□□□□ 0.28
VPS53-201ENST00000291074 MBD3L5A6NJ08 208 aaPredicted RBP16.8■□□□□ 0.28
VPS53-201ENST00000291074 DEFB108AA8MXU0 73 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 KRASP01116 189 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 G6PCP35575 357 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 CD200P41217 278 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 EDDM3AQ14507 147 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 P2RY6Q15077 328 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 SMIM21Q3B7S5 101 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 SPRNQ5BIV9 151 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 ZFP82Q8N141 532 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 MBD3L2Q8NHZ7 208 aaPredicted RBP16.8■□□□□ 0.28
VPS53-201ENST00000291074 SFT2D1Q8WV19 159 aa16.8■□□□□ 0.28
VPS53-201ENST00000291074 KLF2Q9Y5W3 355 aaPredicted RBP16.8■□□□□ 0.28
VPS53-201ENST00000291074 RBFOX3A6NFN3 312 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 K7EM74 188 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 DFFBO76075 338 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 CEACAM1P13688 526 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 LTC4SQ16873 150 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 SPANXN5Q5MJ07 72 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 LINC00469Q8N7U9 141 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 PRR7Q8TB68 274 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 IFNA5P01569 189 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 NINJ1Q92982 152 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 ISOC2Q96AB3 205 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 FAM215AQ9Y5M1 114 aa16.79■□□□□ 0.28
VPS53-201ENST00000291074 RNF212BA8MTL3 300 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 C17orf98A8MV24 154 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 S1PR2O95136 353 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 BRWD1-AS2P59051 145 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 EIF4EBP1Q13541 118 aaPredicted RBP16.78■□□□□ 0.28
VPS53-201ENST00000291074 ZNF474Q6S9Z5 364 aaPredicted RBP16.78■□□□□ 0.28
VPS53-201ENST00000291074 C2CD4CQ8TF44 421 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 S100PBPQ96BU1 408 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 PLPPR2Q96GM1 343 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 M0R1B8 84 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 TM4SF5O14894 197 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 AVPI1Q5T686 147 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 BEND4Q6ZU67 534 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 ZNF525Q8N782 197 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 VSIRQ9H7M9 311 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 MMP24Q9Y5R2 645 aa16.78■□□□□ 0.28
VPS53-201ENST00000291074 A0A1B0GW64 132 aa16.77■□□□□ 0.28
VPS53-201ENST00000291074 FBP1P09467 338 aa16.77■□□□□ 0.28
VPS53-201ENST00000291074 CEBPGP53567 150 aa16.77■□□□□ 0.28
VPS53-201ENST00000291074 TCTEX1D2Q8WW35 142 aa16.77■□□□□ 0.28
VPS53-201ENST00000291074 IGHV3OR15-7A0A075B7D8 119 aa16.77■□□□□ 0.27
VPS53-201ENST00000291074 ST8SIA5O15466 376 aa16.77■□□□□ 0.27
VPS53-201ENST00000291074 TCF15Q12870 199 aa16.77■□□□□ 0.27
VPS53-201ENST00000291074 SP5Q6BEB4 398 aaPredicted RBP16.77■□□□□ 0.27
VPS53-201ENST00000291074 VHLLQ6RSH7 139 aa16.77■□□□□ 0.27
VPS53-201ENST00000291074 KIAA1456Q9P272 454 aa16.77■□□□□ 0.27
VPS53-201ENST00000291074 PLCE1Q9P212 2302 aa16.77■□□□□ 0.27
VPS53-201ENST00000291074 ATMQ13315 3056 aa16.77■□□□□ 0.27
VPS53-201ENST00000291074 ANKRD11Q6UB99 2663 aaPredicted RBP16.77■□□□□ 0.27
VPS53-201ENST00000291074 UBE2KP61086 200 aa16.76■□□□□ 0.27
VPS53-201ENST00000291074 RBKSQ9H477 322 aa16.76■□□□□ 0.27
VPS53-201ENST00000291074 PUS1Q9Y606 427 aaKnown RBP eCLIP16.76■□□□□ 0.27
VPS53-201ENST00000291074 SPTBN2O15020 2390 aa16.76■□□□□ 0.27
VPS53-201ENST00000291074 TUBG1P23258 451 aa16.76■□□□□ 0.27
VPS53-201ENST00000291074 PRDX2P32119 198 aa16.76■□□□□ 0.27
VPS53-201ENST00000291074 NUBP1P53384 320 aa16.76■□□□□ 0.27
VPS53-201ENST00000291074 LILRB2Q8N423 598 aa16.76■□□□□ 0.27
VPS53-201ENST00000291074 TUBG2Q9NRH3 451 aa16.76■□□□□ 0.27
VPS53-201ENST00000291074 PSG11Q9UQ72 335 aa16.76■□□□□ 0.27
VPS53-201ENST00000291074 GVINP1Q7Z2Y8 2422 aa16.76■□□□□ 0.27
VPS53-201ENST00000291074 IFNL4K9M1U5 179 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 RAB13P51153 203 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 TNFRSF9Q07011 255 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 HNF4GQ14541 408 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 SOHLH1Q5JUK2 328 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 IGKV1D-17A0A075B6S4 117 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 ODAMA1E959 279 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 LINC00473A8K010 186 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 CLDN1O95832 211 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 PLA2G5P39877 138 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 ICAM4Q14773 271 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 Q3ZCU0 254 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 ZBTB34Q8NCN2 500 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 SCGB1C1Q8TD33 95 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 HIST1H2BAQ96A08 127 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 RPRMQ9NS64 109 aa16.75■□□□□ 0.27
VPS53-201ENST00000291074 A0A1W2PPH5 198 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms