RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 FAM214BQ7L5A3 538 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 ARV1Q9H2C2 271 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 RNF115Q9Y4L5 304 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 WSB1Q9Y6I7 421 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 PITX3O75364 302 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 ZNF883P0CG24 379 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 COX5BP10606 129 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 OR5D13Q8NGL4 314 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 NINJ1Q92982 152 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 RAB39BQ96DA2 213 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 KCNIP1Q9NZI2 227 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 CSMD1Q96PZ7 3565 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 ZZEF1O43149 2961 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 EDDM3BP56851 147 aa14□□□□□ -0.17
VPS54-201ENST00000272322 PLA2G2CQ5R387 149 aa14□□□□□ -0.17
VPS54-201ENST00000272322 SSX7Q7RTT5 188 aa14□□□□□ -0.17
VPS54-201ENST00000272322 ZNF295-AS1Q8N0V1 137 aa14□□□□□ -0.17
VPS54-201ENST00000272322 CACNA1BQ00975 2339 aa14□□□□□ -0.17
VPS54-201ENST00000272322 SELLP14151 372 aa14□□□□□ -0.17
VPS54-201ENST00000272322 Q8NFD4 153 aa14□□□□□ -0.17
VPS54-201ENST00000272322 CLEC18AA5D8T8 446 aa14□□□□□ -0.17
VPS54-201ENST00000272322 C17orf98A8MV24 154 aa14□□□□□ -0.17
VPS54-201ENST00000272322 HBZP02008 142 aa14□□□□□ -0.17
VPS54-201ENST00000272322 PTAFRP25105 342 aa14□□□□□ -0.17
VPS54-201ENST00000272322 Q3ZCU0 254 aa14□□□□□ -0.17
VPS54-201ENST00000272322 SPRNQ5BIV9 151 aa14□□□□□ -0.17
VPS54-201ENST00000272322 ZNF429Q86V71 674 aa14□□□□□ -0.17
VPS54-201ENST00000272322 SAXO1Q8IYX7 474 aa14□□□□□ -0.17
VPS54-201ENST00000272322 CLEC18CQ8NCF0 446 aa14□□□□□ -0.17
VPS54-201ENST00000272322 OR4C12Q96R67 309 aa14□□□□□ -0.17
VPS54-201ENST00000272322 ATP5SQ99766 215 aa14□□□□□ -0.17
VPS54-201ENST00000272322 AURKAIP1Q9NWT8 199 aaPredicted RBP14□□□□□ -0.17
VPS54-201ENST00000272322 POLDIP2Q9Y2S7 368 aa14□□□□□ -0.17
VPS54-201ENST00000272322 GALMQ96C23 342 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 STRAPQ9Y3F4 350 aaKnown RBP13.99□□□□□ -0.17
VPS54-201ENST00000272322 CEBPZOSA8MTT3 80 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 S1PR2O95136 353 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 CECR9P0C854 216 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 MMP9P14780 707 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 GABRA6Q16445 453 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 NECAP1Q8NC96 275 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 SLC25A22Q9H936 323 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A10PA6NDY2 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A18PA6NE21 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A16PA6NEW6 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A20PA6NIJ5 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A8PA6NJQ4 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A7PA6NKC0 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A22PA8MWA6 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A12PA8MX19 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A5PA8MXJ8 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A23PA8MXZ1 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A15PP0C7V4 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A13PP0C7W8 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A14PP0C7W9 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FAM90A24PP0C7X0 464 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 FTH1P19P0C7X4 201 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 DLK1P80370 383 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 ZNRF1Q8ND25 227 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 GMPPAQ96IJ6 420 aaPredicted RBP13.99□□□□□ -0.17
VPS54-201ENST00000272322 GP6Q9HCN6 339 aa13.99□□□□□ -0.17
VPS54-201ENST00000272322 LRP5LA4QPB2 252 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 KIR2DL2P43627 348 aaPredicted RBP13.98□□□□□ -0.17
VPS54-201ENST00000272322 RPS23P62266 143 aaKnown RBP13.98□□□□□ -0.17
VPS54-201ENST00000272322 COL10A1Q03692 680 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 UTF1Q5T230 341 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 ZNF497Q6ZNH5 498 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 OR13A1Q8NGR1 328 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 RIMS4Q9H426 269 aaPredicted RBP13.98□□□□□ -0.17
VPS54-201ENST00000272322 ATPIF1Q9UII2 106 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 SPRY3O43610 288 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 SS18L1O75177 396 aaPredicted RBP13.98□□□□□ -0.17
VPS54-201ENST00000272322 YIF1AO95070 293 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 RAC2P15153 192 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 RAB5AP20339 215 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 HAPLN4Q86UW8 402 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 LYPD6BQ8NI32 183 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 PLXNB1O43157 2135 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 LRBAP50851 2863 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 SMCO3A2RU48 225 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 ZG16O60844 167 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 GCH1P30793 250 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 ZNF787Q6DD87 383 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 SDSLQ96GA7 329 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 C11orf1Q9H5F2 150 aa13.98□□□□□ -0.17
VPS54-201ENST00000272322 PGA5P0DJD9 388 aa13.97□□□□□ -0.17
VPS54-201ENST00000272322 GATAD1Q8WUU5 269 aa13.97□□□□□ -0.17
VPS54-201ENST00000272322 LRRC29Q8WV35 223 aa13.97□□□□□ -0.17
VPS54-201ENST00000272322 PARD6AQ9NPB6 346 aa13.97□□□□□ -0.17
VPS54-201ENST00000272322 GNG12Q9UBI6 72 aa13.97□□□□□ -0.17
VPS54-201ENST00000272322 ASH1LQ9NR48 2969 aaKnown RBP13.97□□□□□ -0.17
VPS54-201ENST00000272322 RAB5CP51148 216 aa13.97□□□□□ -0.17
VPS54-201ENST00000272322 ERVFRD-1P60508 538 aa13.97□□□□□ -0.17
VPS54-201ENST00000272322 TGIF2-C20orf24A0A0A6YYL0 155 aa13.96□□□□□ -0.17
VPS54-201ENST00000272322 SCAF4O95104 1147 aaKnown RBP13.96□□□□□ -0.17
VPS54-201ENST00000272322 TUBG1P23258 451 aa13.96□□□□□ -0.17
VPS54-201ENST00000272322 TAS2R30P59541 319 aa13.96□□□□□ -0.17
VPS54-201ENST00000272322 RAB2AP61019 212 aa13.96□□□□□ -0.17
VPS54-201ENST00000272322 HINT2Q9BX68 163 aa13.96□□□□□ -0.17
VPS54-201ENST00000272322 M0R1B8 84 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms