RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NEU1Q99519 415 aa12.21□□□□□ -0.46
CCDC88A-201ENST00000263630 SLC25A2Q9BXI2 301 aa12.21□□□□□ -0.46
CCDC88A-201ENST00000263630 PSMB11A5LHX3 300 aa12.21□□□□□ -0.46
CCDC88A-201ENST00000263630 MGST2Q99735 147 aa12.21□□□□□ -0.46
CCDC88A-201ENST00000263630 SLC25A37Q9NYZ2 338 aa12.21□□□□□ -0.46
CCDC88A-201ENST00000263630 CKS1BP61024 79 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 TSPO2Q5TGU0 170 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 C12orf73Q69YU5 71 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 PLPP3O14495 311 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 RTN4RQ9BZR6 473 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 SLIRPQ9GZT3 109 aaKnown RBP12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 ZBP1Q9H171 429 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 KLK15Q9H2R5 256 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 TUBA4BQ9H853 241 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 F5P12259 2224 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 SHISA5Q8N114 240 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 SMIM14Q96QK8 99 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 GAPDHP04406 335 aaKnown RBP12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 SELENOPP49908 381 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 FAM74A4Q5TZK3 123 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 LILRA3Q8N6C8 439 aaPredicted RBP12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 SSC4DQ8WTU2 575 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 ASB16Q96NS5 453 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 PARLQ9H300 379 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 STARD6P59095 220 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 KRTCAP3Q53RY4 240 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 OR8B12Q8NGG6 310 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 PCGF1Q9BSM1 259 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 ZFP64Q9NPA5 681 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 ZNF98A6NK75 572 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 CGB1A6NKQ9 187 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 TFPI2P48307 235 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 RPL31P62899 125 aaKnown RBP12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 SOSTQ9BQB4 213 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 MCM3APO60318 1980 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 A0A1W2PRD5 423 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 A0A1W2PRF3 423 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 A0A1W2PRM7 423 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 CYB561D1Q8N8Q1 229 aa12.2□□□□□ -0.46
CCDC88A-201ENST00000263630 MEF2BQ02080 365 aaPredicted RBP12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 PRR7Q8TB68 274 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 DERL1Q9BUN8 251 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 PGLYRP3Q96LB9 341 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 OR51M1Q9H341 326 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 A0A1W2PR80 420 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 ASB10Q8WXI3 467 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 MPDZO75970 2070 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 IFNL4K9M1U5 179 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 ADAP1O75689 374 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 CEACAM4O75871 244 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 CRPP02741 224 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 MYO5AQ9Y4I1 1855 aaKnown RBP12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 TDGF1P13385 188 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 ZNF562Q6V9R5 426 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 TTC9CQ8N5M4 171 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 IL36RNQ9UBH0 155 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 TRBV20OR9-2A0A075B6H5 130 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 NDUFB4O95168 129 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 C17orf99Q6UX52 265 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 SH2D5Q6ZV89 423 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 GVQW1Q8N7I0 195 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 SLC25A15Q9Y619 301 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 CAMTA1Q9Y6Y1 1673 aa12.19□□□□□ -0.46
CCDC88A-201ENST00000263630 DLL1O00548 723 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 FHITP49789 147 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 H0Y8X5 98 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 ABHD1Q96SE0 405 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 SF3B5Q9BWJ5 86 aaKnown RBP12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 EDA2RQ9HAV5 297 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 TOPAZ1Q8N9V7 1692 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 KIAA2026Q5HYC2 2103 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 RRHO14718 337 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 PAX2Q02962 417 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 FAM209BQ5JX69 171 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 VKORC1L1Q8N0U8 176 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 GPBAR1Q8TDU6 330 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 YAE1D1Q9NRH1 226 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 PRKNO60260 465 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 PF4P02776 101 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 HSPB1P04792 205 aaKnown RBP12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 PLSCR2Q9NRY7 297 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 LINC00869P0C866 280 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 ZNF658BQ4V348 819 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 GGTLC3B5MD39 225 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 CADM4Q8NFZ8 388 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 OR2Y1Q8NGV0 311 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 FOXJ2Q9P0K8 574 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 TCRBV16S1A1N1A0A5B0 115 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 EAF1Q96JC9 268 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 TRAV8-4A0A0B4J246 113 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 ACER2Q5QJU3 275 aa12.18□□□□□ -0.46
CCDC88A-201ENST00000263630 KNDC1Q76NI1 1749 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 RPL27AP46776 148 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 AURKAIP1Q9NWT8 199 aaPredicted RBP12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 DOCK2Q92608 1830 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 SDHCQ99643 169 aaPredicted RBP12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 SLC6A13Q9NSD5 602 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 PSG2P11465 335 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 HBBP68871 147 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 FOXQ1Q9C009 403 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms