RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 MLNRO43193 412 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 FOLR2P14207 255 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 AGAP20933 346 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 TNFSF10P50591 281 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 ERVK11-1P61568 191 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 EDDM3AQ14507 147 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 TMEM178AQ8NBL3 297 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 ABHD14BQ96IU4 210 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 KCNIP1Q9NZI2 227 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 CACNA1GO43497 2377 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 C12orf77C9JDV5 145 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.31□□□□□ -0.44
CNOT3-201ENST00000221232 DFFBO76075 338 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 TRIP6Q15654 476 aaKnown RBP12.31□□□□□ -0.44
CNOT3-201ENST00000221232 ZNF726P1Q15940 193 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 GMPPAQ96IJ6 420 aaPredicted RBP12.31□□□□□ -0.44
CNOT3-201ENST00000221232 TMEM9BQ9NQ34 198 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 SMG1Q96Q15 3661 aaKnown RBP12.31□□□□□ -0.44
CNOT3-201ENST00000221232 MGAQ8IWI9 3026 aa12.31□□□□□ -0.44
CNOT3-201ENST00000221232 SPAARA0A1B0GVQ0 90 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 OR5H1A6NKK0 313 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 TIMM8AO60220 97 aaPredicted RBP12.3□□□□□ -0.44
CNOT3-201ENST00000221232 SSTR5P35346 364 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 GLIPR1P48060 266 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 ZNF787Q6DD87 383 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 FAM234AQ9H0X4 552 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 KMT2EQ8IZD2 1858 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 TGIF2-C20orf24A0A0A6YYL0 155 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 CXCL1P09341 107 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 DEFA4P12838 97 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 MMP9P14780 707 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 GABRA6Q16445 453 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 RNF212Q495C1 297 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 ZNF525Q8N782 197 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 GALMQ96C23 342 aa12.3□□□□□ -0.44
CNOT3-201ENST00000221232 YIF1AO95070 293 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 HBZP02008 142 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 WT1P19544 449 aaPredicted RBP12.29□□□□□ -0.44
CNOT3-201ENST00000221232 RAB2AP61019 212 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 ZNF674Q2M3X9 581 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 FAM214BQ7L5A3 538 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 ZDHHC16Q969W1 377 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 C5orf30Q96GV9 206 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 NIPSNAP3BQ9BS92 247 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 ZDHHC11Q9H8X9 412 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 LIN7CQ9NUP9 197 aaKnown RBP12.29□□□□□ -0.44
CNOT3-201ENST00000221232 C17orf98A8MV24 154 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 PTBP3O95758 552 aaKnown RBP12.29□□□□□ -0.44
CNOT3-201ENST00000221232 IFNA4P05014 189 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 HOXC12P31275 282 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 C9orf106Q8NAJ2 232 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 TCTEX1D2Q8WW35 142 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 TMPRSS5Q9H3S3 457 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 RBKSQ9H477 322 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 TUBA4BQ9H853 241 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 DCAF16Q9NXF7 216 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 CEP250Q9BV73 2442 aa12.29□□□□□ -0.44
CNOT3-201ENST00000221232 CEBPZOSA8MTT3 80 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 S1PR2O95136 353 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 RAC2P15153 192 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 MDKP21741 143 aaPredicted RBP12.28□□□□□ -0.44
CNOT3-201ENST00000221232 ERVFRD-1P60508 538 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 ZNF146Q15072 292 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 DEFB124Q8NES8 71 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 Q8WTZ3 238 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 MUCL1Q96DR8 90 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 NIT2Q9NQR4 276 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 DUSP13Q9UII6 198 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 ST8SIA5O15466 376 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 MDH2P40926 338 aaKnown RBP12.28□□□□□ -0.44
CNOT3-201ENST00000221232 NDUFA6P56556 154 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 ZNF506Q5JVG8 444 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 C11orf53Q8IXP5 236 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 RYDENQ9NUL5 291 aaKnown RBP12.28□□□□□ -0.44
CNOT3-201ENST00000221232 S100A9P06702 114 aaKnown RBP12.28□□□□□ -0.44
CNOT3-201ENST00000221232 OR8U8P0C7N1 319 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 KIAA0141Q14154 515 aaPredicted RBP12.28□□□□□ -0.44
CNOT3-201ENST00000221232 PDZD11Q5EBL8 140 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 SSX9Q7RTT3 188 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 Q8IYB0 196 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 NINJ1Q92982 152 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 LSM10Q969L4 123 aaKnown RBP12.28□□□□□ -0.44
CNOT3-201ENST00000221232 TVP23CQ96ET8 276 aa12.28□□□□□ -0.44
CNOT3-201ENST00000221232 RCC1LQ96I51 464 aaKnown RBP12.28□□□□□ -0.44
CNOT3-201ENST00000221232 HEATR1Q9H583 2144 aaKnown RBP12.27□□□□□ -0.44
CNOT3-201ENST00000221232 A0A1B0GW64 132 aa12.27□□□□□ -0.45
CNOT3-201ENST00000221232 TMEM30CPA0ZSE6 113 aa12.27□□□□□ -0.45
CNOT3-201ENST00000221232 CEACAM1P13688 526 aa12.27□□□□□ -0.45
CNOT3-201ENST00000221232 CD200P41217 278 aa12.27□□□□□ -0.45
CNOT3-201ENST00000221232 KIR2DL2P43627 348 aaPredicted RBP12.27□□□□□ -0.45
CNOT3-201ENST00000221232 COL10A1Q03692 680 aa12.27□□□□□ -0.45
CNOT3-201ENST00000221232 SLC38A11Q08AI6 406 aa12.27□□□□□ -0.45
CNOT3-201ENST00000221232 HEPN1Q6WQI6 88 aa12.27□□□□□ -0.45
CNOT3-201ENST00000221232 COQ2Q96H96 371 aa12.27□□□□□ -0.45
CNOT3-201ENST00000221232 OPN3Q9H1Y3 402 aaPredicted RBP12.27□□□□□ -0.45
CNOT3-201ENST00000221232 MBNL3Q9NUK0 354 aaKnown RBP12.27□□□□□ -0.45
CNOT3-201ENST00000221232 PSG11Q9UQ72 335 aa12.27□□□□□ -0.45
CNOT3-201ENST00000221232 BTBD17A6NE02 478 aa12.27□□□□□ -0.45
CNOT3-201ENST00000221232 IQCF6A8MYZ5 107 aa12.27□□□□□ -0.45
CNOT3-201ENST00000221232 CYB5BO43169 146 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms