RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 FAM166AQ6J272 317 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 HMGCLL1Q8TB92 370 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 TMPRSS13Q9BYE2 586 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 PGPEP1Q9NXJ5 209 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 HPXP02790 462 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 CAMPP49913 170 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 EMP1P54849 157 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 CFHR1Q03591 330 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 SMN1Q16637 294 aaKnown RBP5.35□□□□□ -1.55
SCN1A-217ENST00000637988 RALGAPA2Q2PPJ7 1873 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 KIAA1551Q9HCM1 1747 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 FCN1O00602 326 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 SEC11BP0C7V7 166 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 HOXB3P14651 431 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-217ENST00000637988 NSUN5P2Q63ZY6 315 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 OR13A1Q8NGR1 328 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 MS4A10Q96PG2 267 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM204Q9BSN7 226 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 ZMIZ1Q9ULJ6 1067 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 PTHLHP12272 177 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 RPS20P60866 119 aaKnown RBP5.35□□□□□ -1.55
SCN1A-217ENST00000637988 PDCD1Q15116 288 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 MEIG1Q5JSS6 88 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 OR8B12Q8NGG6 310 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 OR5C1Q8NGR4 320 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 MEGF10Q96KG7 1140 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 IGHV3OR16-10A0A075B7F0 116 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 LNP1A1A4G5 178 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 PDE6DO43924 150 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 CEACAM4O75871 244 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 RD3LP0DJH9 198 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 CD37P11049 281 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 GPNMBQ14956 572 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 UNQ6494/PRO21346Q6UXR6 183 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 C6orf201Q7Z4U5 140 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 CLRN3Q8NCR9 226 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 NUDT11Q96G61 164 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 ABHD17AQ96GS6 310 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 PRELID3AQ96N28 172 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 ZNF275Q9NSD4 429 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-217ENST00000637988 NUDT3O95989 172 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 DLX6P56179 175 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 SUMO2P61956 95 aaKnown RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 ASAH1Q13510 395 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 KIAA0141Q14154 515 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 BMPERQ8N8U9 685 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 ZFAND2BQ8WV99 257 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 SSMEM1Q8WWF3 244 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 KCNE3Q9Y6H6 103 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM189A5PLL7 270 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 MGST3O14880 152 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 CSRP1P21291 193 aaKnown RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 CEBPDP49716 269 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 RPL8P62917 257 aaKnown RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 SNRPNP63162 240 aaKnown RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 IL13RA2Q14627 380 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 COX19Q49B96 90 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 C10orf128Q5T292 105 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 FAM78BQ5VT40 261 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 KIR2DL4Q99706 377 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 ZNF236Q9UL36 1845 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 COL5A3P25940 1745 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 M0R2Z0 102 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 HPRT1P00492 218 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 MBPP02686 304 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 BTF3P20290 206 aaKnown RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 KLF9Q13886 244 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM241Q24JQ0 296 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 LEMD1Q68G75 181 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 PRSS54Q6PEW0 395 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 C16orf47Q6ZP98 133 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 SAP25Q8TEE9 199 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 PAXXQ9BUH6 204 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 IL19Q9UHD0 177 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 ASB1Q9Y576 335 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 TNFRSF18Q9Y5U5 241 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 ZAR1LA6NP61 321 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 PATE4P0C8F1 98 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 SRD5A1P18405 259 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 HIST1H3AP68431 136 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 GUK1Q16774 197 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 MOGAT2Q3SYC2 334 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 DMRTC1Q5HYR2 192 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 ZNF385CQ66K41 422 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-217ENST00000637988 ARID2Q68CP9 1835 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 PROB1E7EW31 1015 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 PTP4A3O75365 173 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 CD3DP04234 171 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 TRGC1P0CF51 173 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 SPINK2P20155 84 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 COTL1Q14019 142 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 BPIFA4PQ86YQ2 179 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 BVESQ8NE79 360 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 VPS25Q9BRG1 176 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 KCNK7Q9Y2U2 307 aa5.34□□□□□ -1.55
SCN1A-217ENST00000637988 WNK3Q9BYP7 1800 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 TMEM272A0A1B0GTI8 110 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 NPIPB11E5RHQ5 1161 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 CTDSP2O14595 271 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 TDGF1P13385 188 aa5.34□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms