RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 OR10AC1Q8NH08 325 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 MBD3L1Q8WWY6 194 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 GRAMD2BQ96HH9 432 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 OBP2BQ9NPH6 170 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 NXT1Q9UKK6 140 aaKnown RBP4.97□□□□□ -1.61
SCN1A-216ENST00000637968 CKAP5Q14008 2032 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 A0A1B0GWB2 263 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 IGSF23A1L1A6 192 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 NUPR1O60356 82 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 SPINK4O60575 86 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 APCSP02743 223 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 IGFBP2P18065 325 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 CD22P20273 847 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 COX5AP20674 150 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF133P52736 654 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-216ENST00000637968 LYZL2Q7Z4W2 148 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 OR2T6Q8NHC8 308 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 TMEM230Q96A57 120 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 WDR34Q96EX3 536 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 GPR82Q96P67 336 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 TAAR6Q96RI8 345 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 PHF7Q9BWX1 381 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-216ENST00000637968 C20orf141Q9NUB4 165 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 MED29Q9NX70 200 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 RFNGQ9Y644 331 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 BRCA1P38398 1863 aaKnown RBP4.97□□□□□ -1.61
SCN1A-216ENST00000637968 A0A0D9SEW6 157 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 TMEM189A5PLL7 270 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 CD300LBA8K4G0 201 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 B9A039 149 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 C3orf80F5H4A9 247 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 ENSAO43768 121 aaKnown RBP4.97□□□□□ -1.61
SCN1A-216ENST00000637968 CLEC3AO75596 197 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 CFIP05156 583 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 TMPRSS3P57727 454 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 LRRC75BQ2VPJ9 315 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 MRPL2Q5T653 305 aaKnown RBP4.97□□□□□ -1.61
SCN1A-216ENST00000637968 SAMD5Q5TGI4 173 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 HEATR5AQ86XA9 2040 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF764Q96H86 408 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-216ENST00000637968 OR4C12Q96R67 309 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 TIMP4Q99727 224 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 RTBDNQ9BSG5 229 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-216ENST00000637968 HS3ST1O14792 307 aa4.96□□□□□ -1.61
SCN1A-216ENST00000637968 PAGE4O60829 102 aa4.96□□□□□ -1.61
SCN1A-216ENST00000637968 C1QTNF9P0C862 333 aa4.96□□□□□ -1.61
SCN1A-216ENST00000637968 CTRLP40313 264 aa4.96□□□□□ -1.61
SCN1A-216ENST00000637968 RPS18P62269 152 aaKnown RBP4.96□□□□□ -1.61
SCN1A-216ENST00000637968 LCN12Q6JVE5 192 aa4.96□□□□□ -1.61
SCN1A-216ENST00000637968 TDHQ8IZJ6 230 aa4.96□□□□□ -1.61
SCN1A-216ENST00000637968 SCCPDHQ8NBX0 429 aa4.96□□□□□ -1.61
SCN1A-216ENST00000637968 NAA38Q9BRA0 125 aaKnown RBP4.96□□□□□ -1.61
SCN1A-216ENST00000637968 ERG28Q9UKR5 140 aa4.96□□□□□ -1.61
SCN1A-216ENST00000637968 A0A087X0K7 114 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 hCG_38984A0A1B0GV85 526 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 A0A1W2PQM1 296 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 H3BNC9 293 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 SNCGO76070 127 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 NXPH3O95157 252 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 HLA-DRB1P01911 266 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 CT45A6P0DMU7 189 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 CT45A5P0DMU8 189 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 CT45A10P0DMU9 189 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 CT45A7P0DMV0 189 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 IGLL1P15814 213 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 KIR2DS4P43632 304 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 MEF2CQ06413 473 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-216ENST00000637968 POU2AF1Q16633 256 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 CT45A1Q5HYN5 189 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 FCRL6Q6DN72 434 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 FAM57BQ71RH2 274 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 CT45A3Q8NHU0 189 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 DDIT4LQ96D03 193 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 DAZAP1Q96EP5 407 aaKnown RBP4.96□□□□□ -1.62
SCN1A-216ENST00000637968 RBM24Q9BX46 236 aaKnown RBP4.96□□□□□ -1.62
SCN1A-216ENST00000637968 SLC25A22Q9H936 323 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 GNB4Q9HAV0 340 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 RPRMQ9NS64 109 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 HRASLS2Q9NWW9 162 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 PLA2G3Q9NZ20 509 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 WNT16Q9UBV4 365 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 SPAARA0A1B0GVQ0 90 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 LOC107986453A0A1B0GWG9 222 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 PTGER1P34995 402 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 RGRP47804 291 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 KIAA1644Q3SXP7 199 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 INO80CQ6PI98 192 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-216ENST00000637968 MRPL43Q8N983 215 aaKnown RBP4.96□□□□□ -1.62
SCN1A-216ENST00000637968 OR51E1Q8TCB6 317 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 OVCA2Q8WZ82 227 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 MS4A6AQ9H2W1 248 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 ZNF576Q9H609 170 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 HILPDAQ9Y5L2 63 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 ARID2Q68CP9 1835 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 CNTRLQ7Z7A1 2325 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 CTXND1A0A1B0GTU2 59 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 MYADML2A6NDP7 307 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 F2RL2O00254 374 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 KLF4O43474 513 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 REG1AP05451 166 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms