RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ZNF525Q8N782 197 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 UXS1Q8NBZ7 420 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 OR10A7Q8NGE5 316 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 OR52M1Q8NGK5 317 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 FAM216AQ8WUB2 273 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 ZNF714Q96N38 554 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 GFOD1Q9NXC2 390 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 SHPKQ9UHJ6 478 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 RBM7Q9Y580 266 aaKnown RBP15.19■□□□□ 0.02
CLN3-254ENST00000637050 C2orf68Q2NKX9 166 aa15.18■□□□□ 0.02
CLN3-254ENST00000637050 WDR25Q64LD2 544 aaPredicted RBP15.18■□□□□ 0.02
CLN3-254ENST00000637050 C11orf88Q6PI97 169 aa15.18■□□□□ 0.02
CLN3-254ENST00000637050 CMTM1Q8IZ96 169 aa15.18■□□□□ 0.02
CLN3-254ENST00000637050 EDARADDQ8WWZ3 215 aa15.18■□□□□ 0.02
CLN3-254ENST00000637050 AKR1E2Q96JD6 320 aa15.18■□□□□ 0.02
CLN3-254ENST00000637050 FYTTD1Q96QD9 318 aaKnown RBP15.18■□□□□ 0.02
CLN3-254ENST00000637050 KCNIP3Q9Y2W7 256 aa15.18■□□□□ 0.02
CLN3-254ENST00000637050 USF3Q68DE3 2245 aa15.18■□□□□ 0.02
CLN3-254ENST00000637050 DBX1A6NMT0 343 aa15.17■□□□□ 0.02
CLN3-254ENST00000637050 BOLA2-SMG1P6H3BVE0 249 aa15.17■□□□□ 0.02
CLN3-254ENST00000637050 RGS11O94810 467 aa15.17■□□□□ 0.02
CLN3-254ENST00000637050 CCL3L1P16619 93 aa15.17■□□□□ 0.02
CLN3-254ENST00000637050 ANKRD55Q3KP44 614 aa15.17■□□□□ 0.02
CLN3-254ENST00000637050 LY6G6FQ5SQ64 297 aa15.17■□□□□ 0.02
CLN3-254ENST00000637050 HEPN1Q6WQI6 88 aa15.17■□□□□ 0.02
CLN3-254ENST00000637050 TCTE3Q8IZS6 198 aa15.17■□□□□ 0.02
CLN3-254ENST00000637050 AGMATQ9BSE5 352 aa15.17■□□□□ 0.02
CLN3-254ENST00000637050 RPUSD1Q9UJJ7 312 aaKnown RBP15.17■□□□□ 0.02
CLN3-254ENST00000637050 LRRK2Q5S007 2527 aa15.17■□□□□ 0.02
CLN3-254ENST00000637050 ITGB1BP1O14713 200 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 PGLYRP1O75594 196 aaPredicted RBP15.16■□□□□ 0.02
CLN3-254ENST00000637050 MMP23AO75900 390 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 SLC22A5O76082 557 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 ANXA3P12429 323 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 HLA-GP17693 338 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 PDLIM4P50479 330 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 DLX6P56179 175 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 MSMO1Q15800 293 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 PRAMEF5Q5TYX0 476 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 LIN54Q6MZP7 749 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 KCTD9Q7L273 389 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 TBC1D26Q86UD7 250 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 DRAM1Q8N682 238 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 ZNF645Q8N7E2 425 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 COQ8AQ8NI60 647 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 C8orf46Q8TAG6 207 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 PSMG3-AS1Q96PY0 264 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 ZNF436Q9C0F3 470 aaPredicted RBP15.16■□□□□ 0.02
CLN3-254ENST00000637050 GOSR2O14653 212 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 OR5AC1P0C628 307 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 PAX1P15863 534 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 S100GP29377 79 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 UTF1Q5T230 341 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 SUCNR1Q9BXA5 334 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 OR2D2Q9H210 308 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 NARFLQ9H6Q4 476 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 BARX1Q9HBU1 254 aaPredicted RBP15.16■□□□□ 0.02
CLN3-254ENST00000637050 PRR13Q9NZ81 148 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 KCNS2Q9ULS6 477 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 PSG11Q9UQ72 335 aa15.16■□□□□ 0.02
CLN3-254ENST00000637050 C3orf85A0A1B0GTC6 90 aa15.15■□□□□ 0.02
CLN3-254ENST00000637050 OR2A4O95047 310 aa15.15■□□□□ 0.02
CLN3-254ENST00000637050 H2BFSP57053 126 aa15.15■□□□□ 0.02
CLN3-254ENST00000637050 TMEM187Q14656 261 aa15.15■□□□□ 0.02
CLN3-254ENST00000637050 ZBTB34Q8NCN2 500 aa15.15■□□□□ 0.02
CLN3-254ENST00000637050 GLYATL2Q8WU03 294 aa15.15■□□□□ 0.02
CLN3-254ENST00000637050 NRGNQ92686 78 aa15.15■□□□□ 0.02
CLN3-254ENST00000637050 OR2A7Q96R45 310 aa15.15■□□□□ 0.02
CLN3-254ENST00000637050 TP53RKQ96S44 253 aa15.15■□□□□ 0.02
CLN3-254ENST00000637050 RNF150Q9ULK6 438 aa15.15■□□□□ 0.02
CLN3-254ENST00000637050 UTP20O75691 2785 aaKnown RBP15.15■□□□□ 0.02
CLN3-254ENST00000637050 ST8SIA5O15466 376 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 NFYBP25208 207 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 SSTR2P30874 369 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 ZNF134P52741 427 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 ATP5J2P56134 94 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 GNB2P62879 340 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 SP6Q3SY56 376 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 ZNF787Q6DD87 383 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 ZNF439Q8NDP4 499 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 OR5M8Q8NGP6 311 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 C5orf30Q96GV9 206 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 GPHA2Q96T91 129 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 BPESC1Q9GZL8 116 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 PIPOXQ9P0Z9 390 aa15.14■□□□□ 0.01
CLN3-254ENST00000637050 TNFSF12O43508 249 aa15.13■□□□□ 0.01
CLN3-254ENST00000637050 GIPP09681 153 aaPredicted RBP15.13■□□□□ 0.01
CLN3-254ENST00000637050 F2RP25116 425 aa15.13■□□□□ 0.01
CLN3-254ENST00000637050 EIF4EBP1Q13541 118 aaPredicted RBP15.13■□□□□ 0.01
CLN3-254ENST00000637050 DCAF12L2Q5VW00 463 aa15.13■□□□□ 0.01
CLN3-254ENST00000637050 C11orf42Q8N5U0 333 aa15.13■□□□□ 0.01
CLN3-254ENST00000637050 LY6G5BQ8NDX9 201 aa15.13■□□□□ 0.01
CLN3-254ENST00000637050 MSI2Q96DH6 328 aaKnown RBP15.13■□□□□ 0.01
CLN3-254ENST00000637050 DMRTB1Q96MA1 342 aa15.13■□□□□ 0.01
CLN3-254ENST00000637050 SSBP3Q9BWW4 388 aaPredicted RBP15.13■□□□□ 0.01
CLN3-254ENST00000637050 IFI27L2Q9H2X8 130 aa15.13■□□□□ 0.01
CLN3-254ENST00000637050 C17orf98A8MV24 154 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 PHF1O43189 567 aaPredicted RBP15.12■□□□□ 0.01
CLN3-254ENST00000637050 SIX6O95475 246 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 IGHV3-7P01780 117 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms