RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 C5orf30Q96GV9 206 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 CHIAQ9BZP6 476 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 OPN4Q9UHM6 478 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 LINC00312Q9Y6C7 94 aa16.57■□□□□ 0.24
CLN3-250ENST00000636839 ARID1AO14497 2285 aa16.56■□□□□ 0.24
CLN3-250ENST00000636839 CCSO14618 274 aa16.56■□□□□ 0.24
CLN3-250ENST00000636839 ST8SIA5O15466 376 aa16.56■□□□□ 0.24
CLN3-250ENST00000636839 MORN2Q502X0 79 aa16.56■□□□□ 0.24
CLN3-250ENST00000636839 NINJ1Q92982 152 aa16.56■□□□□ 0.24
CLN3-250ENST00000636839 KCNS2Q9ULS6 477 aa16.56■□□□□ 0.24
CLN3-250ENST00000636839 POLQO75417 2590 aa16.56■□□□□ 0.24
CLN3-250ENST00000636839 ARHGAP32A7KAX9 2087 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 GOSR2O14653 212 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 SLC31A2O15432 143 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 DUS4LO95620 317 aaKnown RBP16.55■□□□□ 0.24
CLN3-250ENST00000636839 DLX1P56177 255 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 H2BFSP57053 126 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 TMEM155Q4W5P6 130 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 ABHD14BQ96IU4 210 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 PSG11Q9UQ72 335 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 DOCK11Q5JSL3 2073 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 GPR31O00270 319 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 MPPED1O15442 326 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 OR5AC1P0C628 307 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 PRB3Q04118 309 aaPredicted RBP16.55■□□□□ 0.24
CLN3-250ENST00000636839 MEF2CQ06413 473 aaPredicted RBP16.55■□□□□ 0.24
CLN3-250ENST00000636839 TBC1D26Q86UD7 250 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 SGPP2Q8IWX5 399 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 TP53RKQ96S44 253 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 AGMATQ9BSE5 352 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 BPESC1Q9GZL8 116 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 TOLLIPQ9H0E2 274 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 OR2D2Q9H210 308 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 NAA60Q9H7X0 242 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 ZNRD1Q9P1U0 126 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 UBE2J1Q9Y385 318 aaPredicted RBP16.55■□□□□ 0.24
CLN3-250ENST00000636839 MED13LQ71F56 2210 aa16.55■□□□□ 0.24
CLN3-250ENST00000636839 ZNF729A6NN14 1252 aaPredicted RBP16.54■□□□□ 0.24
CLN3-250ENST00000636839 SLC22A5O76082 557 aa16.54■□□□□ 0.24
CLN3-250ENST00000636839 LINC00205P59089 165 aa16.54■□□□□ 0.24
CLN3-250ENST00000636839 WDR25Q64LD2 544 aaPredicted RBP16.54■□□□□ 0.24
CLN3-250ENST00000636839 OR8B3Q8NGG8 313 aa16.54■□□□□ 0.24
CLN3-250ENST00000636839 NEIL1Q96FI4 390 aaPredicted RBP16.54■□□□□ 0.24
CLN3-250ENST00000636839 PSMG3-AS1Q96PY0 264 aa16.54■□□□□ 0.24
CLN3-250ENST00000636839 OR8B2Q96RD0 313 aa16.54■□□□□ 0.24
CLN3-250ENST00000636839 LINC00574Q9H8X3 128 aa16.54■□□□□ 0.24
CLN3-250ENST00000636839 MIOXQ9UGB7 285 aa16.54■□□□□ 0.24
CLN3-250ENST00000636839 PTPN13Q12923 2485 aa16.54■□□□□ 0.24
CLN3-250ENST00000636839 PGLYRP1O75594 196 aaPredicted RBP16.53■□□□□ 0.24
CLN3-250ENST00000636839 IFNA2P01563 188 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 NKX2-5P52952 324 aaPredicted RBP16.53■□□□□ 0.24
CLN3-250ENST00000636839 ZNF787Q6DD87 383 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 LPCAT3Q6P1A2 487 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 DRAM1Q8N682 238 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 PERPQ96FX8 193 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 ZNF714Q96N38 554 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 PHB2Q99623 299 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 PATZ1Q9HBE1 687 aaKnown RBP16.53■□□□□ 0.24
CLN3-250ENST00000636839 GFOD1Q9NXC2 390 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 IDI2-AS1Q9NZ38 188 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 JPT1Q9UK76 154 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 MAP1AP78559 2803 aaPredicted RBP16.53■□□□□ 0.24
CLN3-250ENST00000636839 ADAP1O75689 374 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 ATP5J2P56134 94 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 Q5BKY6 102 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 LY6G6FQ5SQ64 297 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 BTNL3Q6UXE8 466 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 NLRC3Q7RTR2 1065 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 SPICQ8N5J4 248 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 BVESQ8NE79 360 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 ZNF436Q9C0F3 470 aaPredicted RBP16.53■□□□□ 0.24
CLN3-250ENST00000636839 PIPOXQ9P0Z9 390 aa16.53■□□□□ 0.24
CLN3-250ENST00000636839 C22orf46C9J442 243 aa16.52■□□□□ 0.24
CLN3-250ENST00000636839 DLX6P56179 175 aa16.52■□□□□ 0.24
CLN3-250ENST00000636839 C1orf229Q6ZS94 237 aaPredicted RBP16.52■□□□□ 0.24
CLN3-250ENST00000636839 C11orf42Q8N5U0 333 aa16.52■□□□□ 0.24
CLN3-250ENST00000636839 GLYATL2Q8WU03 294 aa16.52■□□□□ 0.24
CLN3-250ENST00000636839 ZNF486Q96H40 463 aaPredicted RBP16.52■□□□□ 0.24
CLN3-250ENST00000636839 TAS2R3Q9NYW6 316 aa16.52■□□□□ 0.24
CLN3-250ENST00000636839 MPTX1A8MV57 137 aa16.52■□□□□ 0.23
CLN3-250ENST00000636839 YPEL1O60688 119 aa16.52■□□□□ 0.23
CLN3-250ENST00000636839 GNG10P50151 68 aa16.52■□□□□ 0.23
CLN3-250ENST00000636839 TMEM187Q14656 261 aa16.52■□□□□ 0.23
CLN3-250ENST00000636839 CT45A1Q5HYN5 189 aa16.52■□□□□ 0.23
CLN3-250ENST00000636839 OR51H1Q8NH63 302 aa16.52■□□□□ 0.23
CLN3-250ENST00000636839 CT45A3Q8NHU0 189 aa16.52■□□□□ 0.23
CLN3-250ENST00000636839 LHFPL5Q8TAF8 219 aa16.52■□□□□ 0.23
CLN3-250ENST00000636839 YPEL2Q96QA6 119 aa16.52■□□□□ 0.23
CLN3-250ENST00000636839 ABCA12Q86UK0 2595 aa16.51■□□□□ 0.23
CLN3-250ENST00000636839 C3orf85A0A1B0GTC6 90 aa16.51■□□□□ 0.23
CLN3-250ENST00000636839 DBX1A6NMT0 343 aa16.51■□□□□ 0.23
CLN3-250ENST00000636839 PROP1O75360 226 aa16.51■□□□□ 0.23
CLN3-250ENST00000636839 C11orf88Q6PI97 169 aa16.51■□□□□ 0.23
CLN3-250ENST00000636839 RBMXL1Q96E39 390 aaKnown RBP16.51■□□□□ 0.23
CLN3-250ENST00000636839 SEC22AQ96IW7 307 aa16.51■□□□□ 0.23
CLN3-250ENST00000636839 RPUSD1Q9UJJ7 312 aaKnown RBP16.51■□□□□ 0.23
CLN3-250ENST00000636839 GCN1Q92616 2671 aaKnown RBP16.51■□□□□ 0.23
CLN3-250ENST00000636839 RND3P61587 244 aa16.5■□□□□ 0.23
CLN3-250ENST00000636839 GNB2P62879 340 aa16.5■□□□□ 0.23
CLN3-250ENST00000636839 CMTM1Q8IZ96 169 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms