RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 CDS2O95674 445 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 OR5AC1P0C628 307 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 CEACAM6P40199 344 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 EFNA4P52798 201 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 TMEM33P57088 247 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 LOXL3P58215 753 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 RPL31P62899 125 aaKnown RBP8.76□□□□□ -1.01
CLN3-248ENST00000636355 PHLDA2Q53GA4 152 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 HEPN1Q6WQI6 88 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 ZNF66Q6ZN08 573 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 TCF23Q7RTU1 214 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 TBC1D26Q86UD7 250 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 TGIF2LYQ8IUE0 185 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 UXS1Q8NBZ7 420 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 DEFB108BQ8NET1 73 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 C8orf46Q8TAG6 207 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 GLYATL2Q8WU03 294 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 MSI2Q96DH6 328 aaKnown RBP8.76□□□□□ -1.01
CLN3-248ENST00000636355 ABHD14BQ96IU4 210 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 HSD17B10Q99714 261 aaKnown RBP8.76□□□□□ -1.01
CLN3-248ENST00000636355 PDCD10Q9BUL8 212 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 GFOD1Q9NXC2 390 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 COMMD9Q9P000 198 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 GNG12Q9UBI6 72 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 GAB2Q9UQC2 676 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 LAMP3Q9UQV4 416 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 RBM7Q9Y580 266 aaKnown RBP8.76□□□□□ -1.01
CLN3-248ENST00000636355 SMG1Q96Q15 3661 aaKnown RBP8.76□□□□□ -1.01
CLN3-248ENST00000636355 HELZ2Q9BYK8 2649 aaKnown RBP8.75□□□□□ -1.01
CLN3-248ENST00000636355 A0A1W2PPR1 153 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 CLEC18AA5D8T8 446 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 OVOL3O00110 214 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 PHF1O43189 567 aaPredicted RBP8.75□□□□□ -1.01
CLN3-248ENST00000636355 PGLYRP1O75594 196 aaPredicted RBP8.75□□□□□ -1.01
CLN3-248ENST00000636355 ZNF205O95201 554 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 TFF1P04155 84 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 SLC25A6P12236 298 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 SELLP14151 372 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 DAOP14920 347 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 NDUFB7P17568 137 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 ZNF345Q14585 488 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 C17orf58Q2M2W7 97 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 DCAF12L2Q5VW00 463 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 TMEM65Q6PI78 240 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 TPRX1Q8N7U7 411 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 CLEC18CQ8NCF0 446 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 OR8B3Q8NGG8 313 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 CD300LFQ8TDQ1 290 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 IGFBPL1Q8WX77 278 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 RBPMSQ93062 196 aaKnown RBP8.75□□□□□ -1.01
CLN3-248ENST00000636355 NEIL1Q96FI4 390 aaPredicted RBP8.75□□□□□ -1.01
CLN3-248ENST00000636355 C18orf12Q96KH6 178 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 C2orf50Q96LR7 162 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 ZNF714Q96N38 554 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 OR8B2Q96RD0 313 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 OR2D2Q9H210 308 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 UBTD1Q9HAC8 227 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 CCL28Q9NRJ3 127 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 IDI2-AS1Q9NZ38 188 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 RPUSD1Q9UJJ7 312 aaKnown RBP8.75□□□□□ -1.01
CLN3-248ENST00000636355 KCNS2Q9ULS6 477 aa8.75□□□□□ -1.01
CLN3-248ENST00000636355 SPTAN1Q13813 2472 aaKnown RBP8.74□□□□□ -1.01
CLN3-248ENST00000636355 TRAV39A0A0B4J263 110 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 A0A1B0GW55 424 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 C5orf51A6NDU8 294 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 DVL1O14640 695 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 RBFOX2O43251 390 aaKnown RBP eCLIP8.74□□□□□ -1.01
CLN3-248ENST00000636355 ATG12O94817 140 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 F12P00748 615 aaPredicted RBP8.74□□□□□ -1.01
CLN3-248ENST00000636355 IGLV2-14P01704 120 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 SERPINE2P07093 398 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 DUX4L2P0CJ85 424 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 DUX4L3P0CJ86 424 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 DUX4L4P0CJ87 422 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 DUX4L5P0CJ88 424 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 DUX4L6P0CJ89 424 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 DUX4L7P0CJ90 424 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 SLC25A4P12235 298 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 VDAC1P21796 283 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 PPP1CCP36873 323 aaKnown RBP8.74□□□□□ -1.01
CLN3-248ENST00000636355 KIR2DS2P43631 304 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 EIF4EBP1Q13541 118 aaPredicted RBP8.74□□□□□ -1.01
CLN3-248ENST00000636355 GNMTQ14749 295 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 C2orf68Q2NKX9 166 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 MORN2Q502X0 79 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 FAM71F2Q6NXP2 309 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 DUX4L9Q6RFH8 374 aaPredicted RBP8.74□□□□□ -1.01
CLN3-248ENST00000636355 C9orf62Q8N4C0 152 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 DRAM1Q8N682 238 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 PPP1R1CQ8WVI7 109 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 TP53RKQ96S44 253 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 AGMATQ9BSE5 352 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 ABHD14AQ9BUJ0 271 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 CHIAQ9BZP6 476 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 METTL8Q9H825 291 aaKnown RBP8.74□□□□□ -1.01
CLN3-248ENST00000636355 PLEKHF2Q9H8W4 249 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 CTSZQ9UBR2 303 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 DUX4Q9UBX2 424 aa8.74□□□□□ -1.01
CLN3-248ENST00000636355 A0A087X0M5 115 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 A0A1B0GX30 115 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms