RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 HSPA12AO43301 675 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 TXNL1O43396 289 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 ZBTB25P24278 435 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 ZNF137PP52743 207 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 CDNFQ49AH0 187 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 MOB3BQ86TA1 216 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 LYG1Q8N1E2 194 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 OR2AK2Q8NG84 335 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 OR56B4Q8NH76 319 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 PRSS22Q9GZN4 317 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 SPATA2Q9UM82 520 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 ANK2Q01484 3957 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 IGHV1-3A0A0C4DH29 117 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 FAM90A9PA6NNJ1 464 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 KIR2DS1Q14954 304 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 C11orf88Q6PI97 169 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 OR5H6Q8NGV6 325 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 RTN4IP1Q8WWV3 396 aaPredicted RBP16.6■□□□□ 0.25
CLN3-240ENST00000631023 SLC25A33Q9BSK2 321 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 SLC23A1Q9UHI7 598 aa16.6■□□□□ 0.25
CLN3-240ENST00000631023 OR2F2O95006 317 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 FCGR3AP08637 254 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 GSTP1P09211 210 aaKnown RBP16.59■□□□□ 0.25
CLN3-240ENST00000631023 SCTP09683 121 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 REG1BP48304 166 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 SERPINB10P48595 397 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 VBP1P61758 197 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 PITPNAQ00169 270 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 HES1Q14469 280 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 ANKRD13BQ86YJ7 626 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 TGIF2LXQ8IUE1 241 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 OR4A4PQ8NGN8 299 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 EDARADDQ8WWZ3 215 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 CFHR4Q92496 578 aa16.59■□□□□ 0.25
CLN3-240ENST00000631023 RBM14Q96PK6 669 aaKnown RBP16.59■□□□□ 0.25
CLN3-240ENST00000631023 A0A0A6YYH2 397 aa16.58■□□□□ 0.24
CLN3-240ENST00000631023 A6NJ64 397 aa16.58■□□□□ 0.24
CLN3-240ENST00000631023 SNRNP70P08621 437 aaKnown RBP16.58■□□□□ 0.24
CLN3-240ENST00000631023 CEACAM6P40199 344 aa16.58■□□□□ 0.24
CLN3-240ENST00000631023 PROK1P58294 105 aa16.58■□□□□ 0.24
CLN3-240ENST00000631023 NCS1P62166 190 aa16.58■□□□□ 0.24
CLN3-240ENST00000631023 HACD4Q5VWC8 232 aa16.58■□□□□ 0.24
CLN3-240ENST00000631023 GPR141Q7Z602 305 aa16.58■□□□□ 0.24
CLN3-240ENST00000631023 WFDC12Q8WWY7 111 aa16.58■□□□□ 0.24
CLN3-240ENST00000631023 SLC25A46Q96AG3 418 aa16.58■□□□□ 0.24
CLN3-240ENST00000631023 DIABLOQ9NR28 239 aa16.58■□□□□ 0.24
CLN3-240ENST00000631023 M0QZK8 103 aa16.57■□□□□ 0.24
CLN3-240ENST00000631023 ITGB1BP1O14713 200 aa16.57■□□□□ 0.24
CLN3-240ENST00000631023 LANCL1O43813 399 aa16.57■□□□□ 0.24
CLN3-240ENST00000631023 HABP2Q14520 560 aaPredicted RBP16.57■□□□□ 0.24
CLN3-240ENST00000631023 SRSF7Q16629 238 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLN3-240ENST00000631023 PNLIPRP3Q17RR3 467 aa16.57■□□□□ 0.24
CLN3-240ENST00000631023 KCTD12Q96CX2 325 aaKnown RBP16.57■□□□□ 0.24
CLN3-240ENST00000631023 GHITMQ9H3K2 345 aa16.57■□□□□ 0.24
CLN3-240ENST00000631023 FABP7O15540 132 aa16.56■□□□□ 0.24
CLN3-240ENST00000631023 TFAP2AP05549 437 aa16.56■□□□□ 0.24
CLN3-240ENST00000631023 TMEM11P17152 192 aa16.56■□□□□ 0.24
CLN3-240ENST00000631023 DTYMKP23919 212 aa16.56■□□□□ 0.24
CLN3-240ENST00000631023 ALDH3B2P48448 385 aa16.56■□□□□ 0.24
CLN3-240ENST00000631023 ARSJQ5FYB0 599 aaPredicted RBP16.56■□□□□ 0.24
CLN3-240ENST00000631023 GPR107Q5VW38 600 aa16.56■□□□□ 0.24
CLN3-240ENST00000631023 Q8N2B8 174 aa16.56■□□□□ 0.24
CLN3-240ENST00000631023 SLC25A38Q96DW6 304 aa16.56■□□□□ 0.24
CLN3-240ENST00000631023 PIPOXQ9P0Z9 390 aa16.56■□□□□ 0.24
CLN3-240ENST00000631023 ZNF230Q9UIE0 474 aaPredicted RBP16.56■□□□□ 0.24
CLN3-240ENST00000631023 IGKV1D-33P01593 117 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 IGKV1-33P01594 117 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 CD1BP29016 333 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 GNG2P59768 71 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 BLCAPP62952 87 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 Q6ZS49 121 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 S100A16Q96FQ6 103 aaKnown RBP16.55■□□□□ 0.24
CLN3-240ENST00000631023 DCSTAMPQ9H295 470 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 ZNF702PQ9H963 129 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 OR1A1Q9P1Q5 309 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 SIGLEC9Q9Y336 463 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 TRAV18A0A075B6X5 111 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 TMEM235A6NFC5 223 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 RAB29O14966 203 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 GABARAPO95166 117 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 DIRAS3O95661 229 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 ZNF260Q3ZCT1 412 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 IZUMO1Q8IYV9 350 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 OR2T10Q8NGZ9 312 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 OR10J5Q8NHC4 309 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 ELF5Q9UKW6 265 aaPredicted RBP16.55■□□□□ 0.24
CLN3-240ENST00000631023 MOB4Q9Y3A3 225 aa16.55■□□□□ 0.24
CLN3-240ENST00000631023 IGHV3-72A0A0B4J1Y9 119 aa16.54■□□□□ 0.24
CLN3-240ENST00000631023 GSTT2P0CG29 244 aa16.54■□□□□ 0.24
CLN3-240ENST00000631023 GSTT2BP0CG30 244 aa16.54■□□□□ 0.24
CLN3-240ENST00000631023 EBI3Q14213 229 aa16.54■□□□□ 0.24
CLN3-240ENST00000631023 HNF4GQ14541 408 aa16.54■□□□□ 0.24
CLN3-240ENST00000631023 CTF1Q16619 201 aa16.54■□□□□ 0.24
CLN3-240ENST00000631023 UBE2NLQ5JXB2 153 aa16.54■□□□□ 0.24
CLN3-240ENST00000631023 ODF3L1Q8IXM7 274 aa16.54■□□□□ 0.24
CLN3-240ENST00000631023 S1PR3Q99500 378 aa16.54■□□□□ 0.24
CLN3-240ENST00000631023 ABCG5Q9H222 651 aa16.54■□□□□ 0.24
CLN3-240ENST00000631023 IFI27L2Q9H2X8 130 aa16.54■□□□□ 0.24
CLN3-240ENST00000631023 IGKV1-6A0A0C4DH72 117 aa16.53■□□□□ 0.24
CLN3-240ENST00000631023 BET1O15155 118 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms