RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 FNDC9Q8TBE3 224 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 AGR3Q8TD06 166 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 PGLYRP3Q96LB9 341 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 Q96M85 177 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 TBX5Q99593 518 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 MED18Q9BUE0 208 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 GAL3ST2Q9H3Q3 398 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 GOLPH3Q9H4A6 298 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 FBXO44Q9H4M3 255 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 C11orf1Q9H5F2 150 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 METTL17Q9H7H0 456 aaPredicted RBP0.26□□□□□ -2.37
SCN1A-208ENST00000625916 ADAMTSL1Q8N6G6 1762 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 NEBP20929 6669 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 MGAT4DA6NG13 374 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 C8orf87E5RJ46 101 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 H0YIV9 168 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 VAPBO95292 243 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 GPX2P18283 190 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 UGT2B10P36537 528 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 AKR1C3P42330 323 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 CTBP2P56545 445 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 HOXC5Q00444 222 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 XRCC4Q13426 336 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 TMEM155Q4W5P6 130 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 CAVIN4Q5BKX8 364 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 HENMT1Q5T8I9 393 aaKnown RBP0.25□□□□□ -2.37
SCN1A-208ENST00000625916 PID1Q7Z2X4 250 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 OR52K2Q8NGK3 314 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 OR11L1Q8NGX0 322 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 ASB17Q8WXJ9 295 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 TOP1MTQ969P6 601 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 ZNF514Q96K75 400 aaPredicted RBP0.25□□□□□ -2.37
SCN1A-208ENST00000625916 ODF3Q96PU9 254 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 ACBD6Q9BR61 282 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 GTSF1LQ9H1H1 148 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 TMBIM4Q9HC24 238 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 NRBP2Q9NSY0 501 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 TAS2R13Q9NYV9 303 aa0.25□□□□□ -2.37
SCN1A-208ENST00000625916 FN1P02751 2386 aaKnown RBP0.25□□□□□ -2.37
SCN1A-208ENST00000625916 SLX4Q8IY92 1834 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 ATAD5Q96QE3 1844 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 MYO15BQ96JP2 1530 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 TTC41PQ6P2S7 1318 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 TRGV5A0A0B4J1U4 118 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 GOLGA8IPA6NC78 632 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 hCG_2039718K7EN88 272 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 CYTH3O43739 400 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 MRPS14O60783 128 aaKnown RBP0.24□□□□□ -2.37
SCN1A-208ENST00000625916 ZNF737O75373 536 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 PGLYRP1O75594 196 aaPredicted RBP0.24□□□□□ -2.37
SCN1A-208ENST00000625916 SC5DO75845 299 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 CRPP02741 224 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 ZNF728P0DKX0 622 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 ORM2P19652 201 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 BGNP21810 368 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 NPPCP23582 126 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 GADD45AP24522 165 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 ACTR1BP42025 376 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 SULT1A2P50226 295 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 C1QTNF8P60827 252 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 FAM43BQ6ZT52 329 aaPredicted RBP0.24□□□□□ -2.37
SCN1A-208ENST00000625916 RPS19BP1Q86WX3 136 aaKnown RBP0.24□□□□□ -2.37
SCN1A-208ENST00000625916 SYS1Q8N2H4 156 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 ACBD4Q8NC06 268 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 OR4P4Q8NGL7 312 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 CST9LQ9H4G1 147 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 DMAC2Q9NW81 257 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 MED9Q9NWA0 146 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 DNAJC12Q9UKB3 198 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 PSME2Q9UL46 239 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 HHLA3Q9XRX5 114 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 KLK5Q9Y337 293 aaPredicted RBP0.24□□□□□ -2.37
SCN1A-208ENST00000625916 FAM215AQ9Y5M1 114 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 DSTQ03001 7570 aaKnown RBP0.24□□□□□ -2.37
SCN1A-208ENST00000625916 MYO5BQ9ULV0 1848 aa0.24□□□□□ -2.37
SCN1A-208ENST00000625916 OR5K4A6NMS3 321 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 OR11H12B2RN74 326 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 PHGR1C9JFL3 82 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 KDELR3O43731 214 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 SNAI1O95863 264 aaPredicted RBP0.23□□□□□ -2.37
SCN1A-208ENST00000625916 EPPINO95925 133 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 BPGMP07738 259 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 UCHL1P09936 223 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 STAG3L2P0CL84 134 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 RCVRNP35243 200 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 XCL1P47992 114 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 SERPINB10P48595 397 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 ACTBP60709 375 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 TSPAN5P62079 268 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 DYNLL1P63167 89 aaKnown RBP0.23□□□□□ -2.37
SCN1A-208ENST00000625916 ACTG1P63261 375 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 CDK5R1Q15078 307 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 SURF2Q15527 256 aaPredicted RBP0.23□□□□□ -2.37
SCN1A-208ENST00000625916 C6orf183Q5T699 404 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 FP248Q71RG6 208 aaPredicted RBP0.23□□□□□ -2.37
SCN1A-208ENST00000625916 SSX6Q7RTT6 188 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 DOLPP1Q86YN1 238 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 YIPF7Q8N8F6 280 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 OR13C9Q8NGT0 318 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 OR11H2Q8NH07 326 aa0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms