RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.38□□□□□ -1.71
VPS13D-214ENST00000620676 RNASE1P07998 156 aaKnown RBP4.38□□□□□ -1.71
VPS13D-214ENST00000620676 C8orf44Q96CB5 159 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 CST9LQ9H4G1 147 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 TTC3P53804 2025 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 KIR2DS1A0A191URI9 304 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 CGB1A6NKQ9 187 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 NDUFA3O95167 84 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 EML2O95834 649 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 KIR2DS4P43632 304 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 KIR2DS1Q14954 304 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 CA13Q8N1Q1 262 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 NUP188Q5SRE5 1749 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 SIGLEC1Q9BZZ2 1709 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 SH2D1BO14796 132 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 RPL34P49207 117 aaKnown RBP4.38□□□□□ -1.71
VPS13D-214ENST00000620676 FAM162BQ5T6X4 162 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 LYSMD4Q5XG99 296 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 Q6ZWC4 215 aa4.38□□□□□ -1.71
VPS13D-214ENST00000620676 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.38□□□□□ -1.71
VPS13D-214ENST00000620676 LILRA1O75019 489 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 SNCGO76070 127 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 CFIP05156 583 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 LINC00614P0C842 121 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 CATR1Q13166 79 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 OR2M3Q8NG83 312 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 MRGPRDQ8TDS7 321 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 FAM216AQ8WUB2 273 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 MRPL16Q9NX20 251 aaKnown RBP4.37□□□□□ -1.71
VPS13D-214ENST00000620676 A0A0G2JLM5 398 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 HOXB2P14652 356 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 FAM53BQ14153 422 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 PRSS8Q16651 343 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 TMEM95Q3KNT9 176 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 DEFB104AQ8WTQ1 72 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 EAF1Q96JC9 268 aaPredicted RBP4.37□□□□□ -1.71
VPS13D-214ENST00000620676 C1QTNF9BB2RNN3 333 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 THY1P04216 161 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 HGFACQ04756 655 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 FNDC7Q5VTL7 733 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 H1FOOQ8IZA3 346 aaPredicted RBP4.37□□□□□ -1.71
VPS13D-214ENST00000620676 BOD1Q96IK1 185 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 GAGE12BA1L429 117 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 P04436 131 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 IL9P15248 144 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 GDF1P27539 372 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 TWIST1Q15672 202 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 OR1N1Q8NGS0 311 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 ALKBH3Q96Q83 286 aaPredicted RBP4.37□□□□□ -1.71
VPS13D-214ENST00000620676 KIAA1456Q9P272 454 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 SERGEFQ9UGK8 458 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 DAPP1Q9UN19 280 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 LAMB1P07942 1786 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 A1L4Q6 167 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 F8VVB4 439 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 F8VWA3 439 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 FCGR3BO75015 233 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 SELENOTP62341 195 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 RHOBP62745 196 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 C3orf56Q8N813 242 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 KIF13BQ9NQT8 1826 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 TRAV9-2A0A087WT02 112 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 IGHV4-39P01824 125 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 DTX4Q9Y2E6 619 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 TMEM238C9JI98 176 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 CD8AP01732 235 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 P01737 135 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 CEACAM3P40198 252 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 ATP5G3P48201 142 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 TMEM45BQ96B21 275 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 GABRG3Q99928 467 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 KLK15Q9H2R5 256 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 INSL6Q9Y581 213 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 COL2A1P02458 1487 aaPredicted RBP4.37□□□□□ -1.71
VPS13D-214ENST00000620676 PRR32B1ATL7 298 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 KIR2DS3Q14952 304 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 BMFQ96LC9 184 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 RPRMQ9NS64 109 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 WNK2Q9Y3S1 2297 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.37□□□□□ -1.71
VPS13D-214ENST00000620676 CT45A10P0DMU9 189 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 SRSF4Q08170 494 aaKnown RBP4.37□□□□□ -1.71
VPS13D-214ENST00000620676 SAMD5Q5TGI4 173 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 MMD2Q8IY49 270 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 TMEM170AQ8WVE7 144 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 CDCA3Q99618 268 aaPredicted RBP4.37□□□□□ -1.71
VPS13D-214ENST00000620676 CITED2Q99967 270 aaPredicted RBP4.37□□□□□ -1.71
VPS13D-214ENST00000620676 UTP23Q9BRU9 249 aaKnown RBP4.37□□□□□ -1.71
VPS13D-214ENST00000620676 PEF1Q9UBV8 284 aaKnown RBP4.37□□□□□ -1.71
VPS13D-214ENST00000620676 TRBV5-4A0A0C4DH59 114 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 SCO2A0A1W2PP80 73 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 FGF16O43320 207 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 BHLHA9Q7RTU4 235 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 SCCPDHQ8NBX0 429 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 TAF1P21675 1872 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 SCGB1A1P11684 91 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 IL11P20809 199 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 MAS1LP35410 378 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 PPP1CAP62136 330 aa4.37□□□□□ -1.71
VPS13D-214ENST00000620676 FOXF1Q12946 379 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms