RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 BCL6BQ8N143 479 aaPredicted RBP16■□□□□ 0.15
UPF3A-211ENST00000618700 LINC00311Q8N616 119 aa16■□□□□ 0.15
UPF3A-211ENST00000618700 SMIM4Q8WVI0 70 aa16■□□□□ 0.15
UPF3A-211ENST00000618700 MS4A7Q9GZW8 240 aaPredicted RBP16■□□□□ 0.15
UPF3A-211ENST00000618700 TOLLIPQ9H0E2 274 aa16■□□□□ 0.15
UPF3A-211ENST00000618700 MMP28Q9H239 520 aa16■□□□□ 0.15
UPF3A-211ENST00000618700 SOX21Q9Y651 276 aaPredicted RBP16■□□□□ 0.15
UPF3A-211ENST00000618700 SLC31A2O15432 143 aa15.99■□□□□ 0.15
UPF3A-211ENST00000618700 RGS11O94810 467 aa15.99■□□□□ 0.15
UPF3A-211ENST00000618700 ZBTB25P24278 435 aa15.99■□□□□ 0.15
UPF3A-211ENST00000618700 PTBP1P26599 531 aaKnown RBP eCLIP15.99■□□□□ 0.15
UPF3A-211ENST00000618700 RCVRNP35243 200 aa15.99■□□□□ 0.15
UPF3A-211ENST00000618700 GNG10P50151 68 aa15.99■□□□□ 0.15
UPF3A-211ENST00000618700 DGCR2P98153 550 aa15.99■□□□□ 0.15
UPF3A-211ENST00000618700 ZNF79Q15937 498 aa15.99■□□□□ 0.15
UPF3A-211ENST00000618700 MINOS1Q5TGZ0 78 aa15.99■□□□□ 0.15
UPF3A-211ENST00000618700 LHFPL4Q7Z7J7 247 aa15.99■□□□□ 0.15
UPF3A-211ENST00000618700 C17orf50Q8WW18 174 aa15.99■□□□□ 0.15
UPF3A-211ENST00000618700 PARP12Q9H0J9 701 aaKnown RBP15.99■□□□□ 0.15
UPF3A-211ENST00000618700 MINOS1-NBL1R4GNA1 71 aa15.99■□□□□ 0.15
UPF3A-211ENST00000618700 A0A0U1RQK1 487 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 TOR1AO14656 332 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 BET1O15155 118 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 GSTZ1O43708 216 aaPredicted RBP15.98■□□□□ 0.15
UPF3A-211ENST00000618700 FCER2P06734 321 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 CTXN2P0C2S0 81 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 ZNF134P52741 427 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 PRRX1P54821 245 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 SCGB2A2Q13296 93 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 RNASE12Q5GAN4 147 aaKnown RBP15.98■□□□□ 0.15
UPF3A-211ENST00000618700 CT45A1Q5HYN5 189 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 SPANXN2Q5MJ10 180 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 LINC00299Q6ZSB3 139 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 CT45A3Q8NHU0 189 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 FCAMRQ8WWV6 532 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 C22orf15Q8WYQ4 148 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 KLK11Q9UBX7 282 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 MTFP1Q9UDX5 166 aa15.98■□□□□ 0.15
UPF3A-211ENST00000618700 A0A1W2PPE3 182 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 BUB1B-PAK6H3BSN5 160 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 ITGB1BP1O14713 200 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 HSPA12AO43301 675 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 HTR1DP28221 377 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 LGALS4P56470 323 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 ARPC4P59998 168 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 H1FOOQ8IZA3 346 aaPredicted RBP15.97■□□□□ 0.15
UPF3A-211ENST00000618700 OR5AP2Q8NGF4 316 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 OR10J5Q8NHC4 309 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 ZNF48Q96MX3 618 aaPredicted RBP15.97■□□□□ 0.15
UPF3A-211ENST00000618700 SLC6A7Q99884 636 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 ABHD14AQ9BUJ0 271 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 PRDM13Q9H4Q3 707 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 RDH8Q9NYR8 311 aa15.97■□□□□ 0.15
UPF3A-211ENST00000618700 RBMX2Q9Y388 322 aaKnown RBP15.97■□□□□ 0.15
UPF3A-211ENST00000618700 AMMECR1Q9Y4X0 333 aaPredicted RBP15.97■□□□□ 0.15
UPF3A-211ENST00000618700 LY6LH3BQJ8 138 aa15.96■□□□□ 0.15
UPF3A-211ENST00000618700 CEACAM6P40199 344 aa15.96■□□□□ 0.15
UPF3A-211ENST00000618700 ACTBP60709 375 aa15.96■□□□□ 0.15
UPF3A-211ENST00000618700 ACTG1P63261 375 aa15.96■□□□□ 0.15
UPF3A-211ENST00000618700 SSBP1Q04837 148 aaKnown RBP15.96■□□□□ 0.15
UPF3A-211ENST00000618700 CDK10Q15131 360 aa15.96■□□□□ 0.15
UPF3A-211ENST00000618700 DEFB112Q30KQ8 113 aa15.96■□□□□ 0.15
UPF3A-211ENST00000618700 LYSMD2Q8IV50 215 aa15.96■□□□□ 0.15
UPF3A-211ENST00000618700 OR2AK2Q8NG84 335 aa15.96■□□□□ 0.15
UPF3A-211ENST00000618700 GINS4Q9BRT9 223 aa15.96■□□□□ 0.15
UPF3A-211ENST00000618700 DPM3Q9P2X0 92 aa15.96■□□□□ 0.15
UPF3A-211ENST00000618700 ZFHX3Q15911 3703 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 MDFIC2A0A1B0GVS7 189 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 RBBP9O75884 186 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 FBP1P09467 338 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 ZNF137PP52743 207 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 TAS2R46P59540 309 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 LINC00528Q8N1L1 170 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 DYNAPQ8N1N2 210 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 MFSD4AQ8N468 514 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 OR10X1Q8NGY0 326 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 EDARADDQ8WWZ3 215 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 CREB3L1Q96BA8 519 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 MALSU1Q96EH3 234 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 AGMATQ9BSE5 352 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 SRRQ9GZT4 340 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 IFI27L2Q9H2X8 130 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 AKIP1Q9NQ31 210 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 NECAP2Q9NVZ3 263 aa15.95■□□□□ 0.14
UPF3A-211ENST00000618700 ZNF107Q9UII5 783 aaPredicted RBP15.95■□□□□ 0.14
UPF3A-211ENST00000618700 TUSC2O75896 110 aa15.94■□□□□ 0.14
UPF3A-211ENST00000618700 HLA-DMAP28067 261 aa15.94■□□□□ 0.14
UPF3A-211ENST00000618700 PYDC2Q56P42 97 aa15.94■□□□□ 0.14
UPF3A-211ENST00000618700 TPTE2P1Q5T6R2 138 aa15.94■□□□□ 0.14
UPF3A-211ENST00000618700 OVCH2Q7RTZ1 564 aa15.94■□□□□ 0.14
UPF3A-211ENST00000618700 LDLRAD3Q86YD5 345 aa15.94■□□□□ 0.14
UPF3A-211ENST00000618700 ODF3L1Q8IXM7 274 aa15.94■□□□□ 0.14
UPF3A-211ENST00000618700 FAM216AQ8WUB2 273 aa15.94■□□□□ 0.14
UPF3A-211ENST00000618700 ST6GALNAC6Q969X2 333 aa15.94■□□□□ 0.14
UPF3A-211ENST00000618700 C11orf54Q9H0W9 315 aaPredicted RBP15.94■□□□□ 0.14
UPF3A-211ENST00000618700 CUBNO60494 3623 aa15.93■□□□□ 0.14
UPF3A-211ENST00000618700 LEUTXA8MZ59 168 aa15.93■□□□□ 0.14
UPF3A-211ENST00000618700 LANCL1O43813 399 aa15.93■□□□□ 0.14
UPF3A-211ENST00000618700 OR5H8P0DN80 308 aa15.93■□□□□ 0.14
UPF3A-211ENST00000618700 HRH1P35367 487 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms