RNA–Protein interactions for RNA: ENST00000600970.5

USE1-208, Transcript of unconventional SNARE in the ER 1, human

TSL 5

Gene USE1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USE1-208	ENST00000600970	OR52L2P	Q8NGH6	319 aa		12.83	□□□□□ -0.36
USE1-208	ENST00000600970	TMEM106A	Q96A25	262 aa		12.83	□□□□□ -0.36
USE1-208	ENST00000600970	MS4A10	Q96PG2	267 aa		12.83	□□□□□ -0.36
USE1-208	ENST00000600970	TAF9B	Q9HBM6	251 aa		12.83	□□□□□ -0.36
USE1-208	ENST00000600970	SPACA1	Q9HBV2	294 aa		12.83	□□□□□ -0.36
USE1-208	ENST00000600970	ERVK13-1	Q9NX77	482 aa		12.83	□□□□□ -0.36
USE1-208	ENST00000600970	ALMS1	Q8TCU4	4167 aa		12.82	□□□□□ -0.36
USE1-208	ENST00000600970	SNTN	A6NMZ2	147 aa		12.82	□□□□□ -0.36
USE1-208	ENST00000600970	CD2	P06729	351 aa		12.82	□□□□□ -0.36
USE1-208	ENST00000600970	FCGR1A	P12314	374 aa		12.82	□□□□□ -0.36
USE1-208	ENST00000600970	BDKRB2	P30411	391 aa		12.82	□□□□□ -0.36
USE1-208	ENST00000600970	PPP1CC	P36873	323 aa	Known RBP	12.82	□□□□□ -0.36
USE1-208	ENST00000600970	RAB40B	Q12829	278 aa		12.82	□□□□□ -0.36
USE1-208	ENST00000600970	PYHIN1	Q6K0P9	492 aa		12.82	□□□□□ -0.36
USE1-208	ENST00000600970	CD200R1L	Q6Q8B3	271 aa		12.82	□□□□□ -0.36
USE1-208	ENST00000600970	GPR148	Q8TDV2	347 aa		12.82	□□□□□ -0.36
USE1-208	ENST00000600970	FBXL15	Q9H469	300 aa		12.82	□□□□□ -0.36
USE1-208	ENST00000600970	JPT1	Q9UK76	154 aa		12.82	□□□□□ -0.36
USE1-208	ENST00000600970	SAC3D1	A6NKF1	404 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	FCN1	O00602	326 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	RRH	O14718	337 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	OR3A3	P47888	321 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	TPPP2	P59282	170 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	PPP3R1	P63098	170 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	TMEM267	Q0VDI3	215 aa	Predicted RBP	12.81	□□□□□ -0.36
USE1-208	ENST00000600970	ACTBL2	Q562R1	376 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	RAB12	Q6IQ22	244 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	ABHD5	Q8WTS1	349 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	ORAI1	Q96D31	301 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	CENPN	Q96H22	339 aa	Predicted RBP	12.81	□□□□□ -0.36
USE1-208	ENST00000600970	CYYR1	Q96J86	154 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	FAM103A1	Q9BTL3	118 aa	Known RBP	12.81	□□□□□ -0.36
USE1-208	ENST00000600970	MBNL3	Q9NUK0	354 aa	Known RBP	12.81	□□□□□ -0.36
USE1-208	ENST00000600970	CNOT2	Q9NZN8	540 aa	Known RBP	12.81	□□□□□ -0.36
USE1-208	ENST00000600970	PEX16	Q9Y5Y5	336 aa		12.81	□□□□□ -0.36
USE1-208	ENST00000600970	SAA2-SAA4	A0A096LPE2	208 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	SC5D	O75845	299 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	SAA2	P0DJI9	122 aa	Predicted RBP	12.8	□□□□□ -0.36
USE1-208	ENST00000600970	GPR176	Q14439	515 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	AKIRIN2	Q53H80	203 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	UNQ5815/PRO19632	Q6UWF5	114 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	FAM131A	Q6UXB0	335 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	PPP1R27	Q86WC6	154 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	IL17D	Q8TAD2	202 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	MRPS24	Q96EL2	167 aa	Known RBP	12.8	□□□□□ -0.36
USE1-208	ENST00000600970	ZNF184	Q99676	751 aa	Predicted RBP	12.8	□□□□□ -0.36
USE1-208	ENST00000600970	TMED9	Q9BVK6	235 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	TUBA4B	Q9H853	241 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	RETN	Q9HD89	108 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	RNF150	Q9ULK6	438 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	GAB2	Q9UQC2	676 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	GMPPB	Q9Y5P6	360 aa		12.8	□□□□□ -0.36
USE1-208	ENST00000600970	YPEL1	O60688	119 aa		12.79	□□□□□ -0.36
USE1-208	ENST00000600970	FADS2	O95864	444 aa	Known RBP	12.79	□□□□□ -0.36
USE1-208	ENST00000600970	GABRB1	P18505	474 aa		12.79	□□□□□ -0.36
USE1-208	ENST00000600970	HTD2	P86397	168 aa		12.79	□□□□□ -0.36
USE1-208	ENST00000600970	PLGLA	Q15195	96 aa		12.79	□□□□□ -0.36
USE1-208	ENST00000600970	XAF1	Q6GPH4	301 aa		12.79	□□□□□ -0.36
USE1-208	ENST00000600970	LFNG	Q8NES3	379 aa		12.79	□□□□□ -0.36
USE1-208	ENST00000600970	YPEL2	Q96QA6	119 aa		12.79	□□□□□ -0.36
USE1-208	ENST00000600970	THAP7	Q9BT49	309 aa	Predicted RBP	12.79	□□□□□ -0.36
USE1-208	ENST00000600970	SLA2	Q9H6Q3	261 aa		12.79	□□□□□ -0.36
USE1-208	ENST00000600970	RANGRF	Q9HD47	186 aa	Predicted RBP	12.79	□□□□□ -0.36
USE1-208	ENST00000600970	AMBN	Q9NP70	447 aa		12.79	□□□□□ -0.36
USE1-208	ENST00000600970	KCNIP1	Q9NZI2	227 aa		12.79	□□□□□ -0.36
USE1-208	ENST00000600970	UBE2QL1	A1L167	161 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970		H0Y980	276 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	CA11	O75493	328 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	RGS11	O94810	467 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	ALPL	P05186	524 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	IGFBP3	P17936	291 aa	Predicted RBP	12.78	□□□□□ -0.36
USE1-208	ENST00000600970	ZP3	P21754	424 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	CD40LG	P29965	261 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	RIPK1	Q13546	671 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	ZIK1	Q3SY52	487 aa	Predicted RBP	12.78	□□□□□ -0.36
USE1-208	ENST00000600970	LY6G6F	Q5SQ64	297 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	RPL22L1	Q6P5R6	122 aa	Known RBP	12.78	□□□□□ -0.36
USE1-208	ENST00000600970	IL34	Q6ZMJ4	242 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	ZNF554	Q86TJ5	538 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	OR52I1	Q8NGK6	324 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	RDH12	Q96NR8	316 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	FAM110A	Q9BQ89	295 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	HIPK2	Q9H2X6	1198 aa		12.78	□□□□□ -0.36
USE1-208	ENST00000600970	TRGV3	P03979	118 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	MAS1	P04201	325 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	SNRPB	P14678	240 aa	Known RBP	12.77	□□□□□ -0.37
USE1-208	ENST00000600970	KLF5	Q13887	457 aa	Predicted RBP	12.77	□□□□□ -0.37
USE1-208	ENST00000600970	SIGIRR	Q6IA17	410 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	FAM71F2	Q6NXP2	309 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	GLIPR1L1	Q6UWM5	242 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	GTSCR1	Q86UQ5	136 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	OR9G4	Q8NGQ1	327 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	MRPL30	Q8TCC3	161 aa	Known RBP	12.77	□□□□□ -0.37
USE1-208	ENST00000600970	MUL1	Q969V5	352 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	CLCC1	Q96S66	551 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	IFI27L2	Q9H2X8	130 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	BANF2	Q9H503	90 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	ORC6	Q9Y5N6	252 aa		12.77	□□□□□ -0.37
USE1-208	ENST00000600970	FAM90A7P	A6NKC0	464 aa		12.76	□□□□□ -0.37
USE1-208	ENST00000600970	FAM90A23P	A8MXZ1	464 aa		12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms