RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 NFYAP23511 347 aaPredicted RBP11.7□□□□□ -0.54
UPF1-211ENST00000600868 FCGR2CP31995 323 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 UBE2E1P51965 193 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 PRRX1P54821 245 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 PRB3Q04118 309 aaPredicted RBP11.7□□□□□ -0.54
UPF1-211ENST00000600868 C1orf229Q6ZS94 237 aaPredicted RBP11.7□□□□□ -0.54
UPF1-211ENST00000600868 SLC25A48Q6ZT89 311 aaKnown RBP11.7□□□□□ -0.54
UPF1-211ENST00000600868 TMEM17Q86X19 198 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 PNKDQ8N490 385 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 TEX29Q8N6K0 151 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 BEND2Q8NDZ0 799 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 OR2AK2Q8NG84 335 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 OR6F1Q8NGZ6 308 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 LEAP2Q969E1 77 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 LHX4Q969G2 390 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 BORCS5Q969J3 196 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 C7orf50Q9BRJ6 194 aaKnown RBP11.7□□□□□ -0.54
UPF1-211ENST00000600868 C11orf54Q9H0W9 315 aaPredicted RBP11.7□□□□□ -0.54
UPF1-211ENST00000600868 HRASLSQ9HDD0 168 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 OR2W1Q9Y3N9 320 aa11.7□□□□□ -0.54
UPF1-211ENST00000600868 CSPG4Q6UVK1 2322 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 CENPVL3A0A0U1RRI6 287 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 NAP1L6A6NFF2 107 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 A8MV72 311 aaPredicted RBP11.69□□□□□ -0.54
UPF1-211ENST00000600868 ODF3BA8MYP8 253 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 DISC1C4P0D8 188 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 TOR1AO14656 332 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 LY6G6DO95868 133 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 IGLV1-47P01700 117 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 IGHV3-7P01780 117 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 AMY2AP04746 511 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 COX7A1P24310 79 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 RAB7AP51149 207 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 ZNF134P52741 427 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 TSPAN5P62079 268 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 IFITM3Q01628 133 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 KLRD1Q13241 179 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 CT45A1Q5HYN5 189 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 ZNF626Q68DY1 528 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 CT45A3Q8NHU0 189 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 SLC6A7Q99884 636 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 ABHD14AQ9BUJ0 271 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 PARP12Q9H0J9 701 aaKnown RBP11.69□□□□□ -0.54
UPF1-211ENST00000600868 YAE1D1Q9NRH1 226 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 TMEM160Q9NX00 188 aa11.69□□□□□ -0.54
UPF1-211ENST00000600868 CENPXA8MT69 81 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 SLC31A2O15432 143 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 PLA2G10O15496 165 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 PPYP01298 95 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 AADACP22760 399 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 GNG10P50151 68 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 BPIFB3P59826 476 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 HLA-DRB5Q30154 266 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 FAAP20Q6NZ36 180 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 LHFPL1Q86WI0 220 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 OR56B4Q8NH76 319 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 NANPQ8TBE9 248 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 MOB3AQ96BX8 217 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 PRRT1Q99946 306 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 SMR3AQ99954 134 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 AGMATQ9BSE5 352 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 ZNF2Q9BSG1 426 aaPredicted RBP11.68□□□□□ -0.54
UPF1-211ENST00000600868 MMP28Q9H239 520 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 GHITMQ9H3K2 345 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 PALMDQ9NP74 551 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 MCUBQ9NWR8 336 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 SLC2A8Q9NY64 477 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 HIVEP1P15822 2718 aa11.68□□□□□ -0.54
UPF1-211ENST00000600868 TRAV40A0A0B4J280 105 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 IGHV1-69DA0A0B4J2H0 117 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 LINC00854A0A1B0GVQ3 168 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 A0A1W2PPE3 182 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 FSHBP01225 129 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 IGHV1-69P01742 117 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 ARG1P05089 322 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 LUMP51884 338 aaPredicted RBP11.67□□□□□ -0.54
UPF1-211ENST00000600868 HERV-K104P61576 105 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 ASAH1Q13510 395 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 MIDNQ504T8 468 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 KLF17Q5JT82 389 aaPredicted RBP11.67□□□□□ -0.54
UPF1-211ENST00000600868 GPR157Q5UAW9 335 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 C16orf87Q6PH81 154 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 CLEC9AQ6UXN8 241 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 PDZD9Q8IXQ8 264 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 OR4P4Q8NGL7 312 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 OR10X1Q8NGY0 326 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 TERB2Q8NHR7 220 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 CREB3L1Q96BA8 519 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 IFI27L2Q9H2X8 130 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 SCP2D1Q9UJQ7 156 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 TBC1D24Q9ULP9 559 aa11.67□□□□□ -0.54
UPF1-211ENST00000600868 AMMECR1Q9Y4X0 333 aaPredicted RBP11.67□□□□□ -0.54
UPF1-211ENST00000600868 OR5H14A6NHG9 310 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 ST8SIA5O15466 376 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 OR8U9P0C7N5 309 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 IGHV4-38-2P0DP08 117 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 ZNF137PP52743 207 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 FAM120AOSQ5T036 256 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 MINOS1Q5TGZ0 78 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 AADACL3Q5VUY0 350 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms