RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 FBLIM1Q8WUP2 373 aa7.68□□□□□ -1.18
VRK3-216ENST00000599342 IL1F10Q8WWZ1 152 aa7.68□□□□□ -1.18
VRK3-216ENST00000599342 KCTD7Q96MP8 289 aa7.68□□□□□ -1.18
VRK3-216ENST00000599342 YPEL2Q96QA6 119 aa7.68□□□□□ -1.18
VRK3-216ENST00000599342 B9D2Q9BPU9 175 aa7.68□□□□□ -1.18
VRK3-216ENST00000599342 CHCHD6Q9BRQ6 235 aa7.68□□□□□ -1.18
VRK3-216ENST00000599342 TMED9Q9BVK6 235 aa7.68□□□□□ -1.18
VRK3-216ENST00000599342 MRPL20Q9BYC9 149 aaKnown RBP7.68□□□□□ -1.18
VRK3-216ENST00000599342 CHMP1AQ9HD42 196 aaPredicted RBP7.68□□□□□ -1.18
VRK3-216ENST00000599342 KIAA1456Q9P272 454 aa7.68□□□□□ -1.18
VRK3-216ENST00000599342 STEAP1Q9UHE8 339 aa7.68□□□□□ -1.18
VRK3-216ENST00000599342 ZNF580Q9UK33 172 aa7.68□□□□□ -1.18
VRK3-216ENST00000599342 DNAH3Q8TD57 4116 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 SAA2-SAA4A0A096LPE2 208 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 CASQ2O14958 399 aaPredicted RBP7.67□□□□□ -1.18
VRK3-216ENST00000599342 NBR2O15453 112 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 CDK1P06493 297 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 SAA2P0DJI9 122 aaPredicted RBP7.67□□□□□ -1.18
VRK3-216ENST00000599342 VSIG8P0DPA2 414 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 PSMB8P28062 276 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 HTR2CP28335 458 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 LUMP51884 338 aaPredicted RBP7.67□□□□□ -1.18
VRK3-216ENST00000599342 RPS27AP62979 156 aaKnown RBP7.67□□□□□ -1.18
VRK3-216ENST00000599342 MED22Q15528 200 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 HMGN3Q15651 99 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 HSD17B12Q53GQ0 312 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 C6orf141Q5SZD1 244 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 FAM27D1Q5T7N8 215 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 OR10K2Q6IF99 312 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 ZNF833PQ6ZTB9 187 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 C6orf201Q7Z4U5 140 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 ODF3L1Q8IXM7 274 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 KCNG3Q8TAE7 436 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 SETD6Q8TBK2 473 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 PHYHIPQ92561 330 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 RBMXL1Q96E39 390 aaKnown RBP7.67□□□□□ -1.18
VRK3-216ENST00000599342 NABP2Q9BQ15 211 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 SULT4A1Q9BR01 284 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 PARP11Q9NR21 331 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 PLEKHJ1Q9NW61 149 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 FKBP14Q9NWM8 211 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 SCN3BQ9NY72 215 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 PIPOXQ9P0Z9 390 aa7.67□□□□□ -1.18
VRK3-216ENST00000599342 SEC14L6B5MCN3 397 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 PTGES3LE9PB15 166 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 ATP6V0E1O15342 81 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 HLA-DRB1P01911 266 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 SRMP19623 302 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 BLVRBP30043 206 aaPredicted RBP7.66□□□□□ -1.18
VRK3-216ENST00000599342 PLGLAQ15195 96 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 SPHARQ15513 63 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 LY6G6FQ5SQ64 297 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 RNLSQ5VYX0 342 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 FAM71F2Q6NXP2 309 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 MOB1BQ7L9L4 216 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 CEACAM19Q7Z692 300 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 LRRTM1Q86UE6 522 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 SVOPQ8N4V2 548 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 OR11H1Q8NG94 326 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 OR6M1Q8NGM8 313 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 UFD1Q92890 307 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 CYYR1Q96J86 154 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 URM1Q9BTM9 101 aaKnown RBP7.66□□□□□ -1.18
VRK3-216ENST00000599342 FAAP24Q9BTP7 215 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 TM2D1Q9BX74 207 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 ANKRD60Q9BZ19 345 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 OR51J1Q9H342 316 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 WSB1Q9Y6I7 421 aa7.66□□□□□ -1.18
VRK3-216ENST00000599342 TRAV41A0A0B4J266 112 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 G3V318 75 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 RAB29O14966 203 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 ST8SIA5O15466 376 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 BPNT1O95861 308 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 OR8U8P0C7N1 319 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 CNTFRP26992 372 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 ECI1P42126 302 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 OR3A3P47888 321 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 UNC119Q13432 240 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 FHL3Q13643 280 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 C5orf64Q2M2E5 130 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 ZNF260Q3ZCT1 412 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 C1orf100Q5SVJ3 147 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 LIPKQ5VXJ0 399 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 LIN54Q6MZP7 749 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 FAM131AQ6UXB0 335 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 C5orf24Q7Z6I8 188 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 UBE2E2Q96LR5 201 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 NICN1Q9BSH3 213 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 IFI27L2Q9H2X8 130 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 RIMS4Q9H426 269 aaPredicted RBP7.65□□□□□ -1.18
VRK3-216ENST00000599342 KCNK15Q9H427 330 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 PLGRKTQ9HBL7 147 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 VSIG4Q9Y279 399 aa7.65□□□□□ -1.18
VRK3-216ENST00000599342 IGHV7-81A0A0B4J1V7 117 aa7.64□□□□□ -1.19
VRK3-216ENST00000599342 OR5H14A6NHG9 310 aa7.64□□□□□ -1.19
VRK3-216ENST00000599342 TMEM14DPA8MWL7 114 aa7.64□□□□□ -1.19
VRK3-216ENST00000599342 H7C2Y5 167 aa7.64□□□□□ -1.19
VRK3-216ENST00000599342 SLC22A1O15245 554 aa7.64□□□□□ -1.19
VRK3-216ENST00000599342 HSPA12AO43301 675 aa7.64□□□□□ -1.19
VRK3-216ENST00000599342 NDUFA3O95167 84 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms