RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 SETD6Q8TBK2 473 aa12.73□□□□□ -0.37
USHBP1-206ENST00000596436 SLC25A38Q96DW6 304 aa12.73□□□□□ -0.37
USHBP1-206ENST00000596436 OR4F4Q96R69 305 aa12.73□□□□□ -0.37
USHBP1-206ENST00000596436 ATG5Q9H1Y0 275 aa12.73□□□□□ -0.37
USHBP1-206ENST00000596436 C12orf4Q9NQ89 552 aa12.73□□□□□ -0.37
USHBP1-206ENST00000596436 KCNIP1Q9NZI2 227 aa12.73□□□□□ -0.37
USHBP1-206ENST00000596436 HIST1H1DP16402 221 aaKnown RBP12.72□□□□□ -0.37
USHBP1-206ENST00000596436 DYNLT3P51808 116 aa12.72□□□□□ -0.37
USHBP1-206ENST00000596436 VBP1P61758 197 aa12.72□□□□□ -0.37
USHBP1-206ENST00000596436 TMEM30BQ3MIR4 351 aa12.72□□□□□ -0.37
USHBP1-206ENST00000596436 CITED2Q99967 270 aaPredicted RBP12.72□□□□□ -0.37
USHBP1-206ENST00000596436 CMSS1Q9BQ75 279 aaKnown RBP12.72□□□□□ -0.37
USHBP1-206ENST00000596436 Q9N2K0 584 aa12.72□□□□□ -0.37
USHBP1-206ENST00000596436 ELF5Q9UKW6 265 aaPredicted RBP12.72□□□□□ -0.37
USHBP1-206ENST00000596436 A0A075B6Q4 140 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 A0A1W2PPI3 338 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 CD24P25063 80 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 PPP1CCP36873 323 aaKnown RBP12.71□□□□□ -0.37
USHBP1-206ENST00000596436 CEACAM3P40198 252 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 ZNF134P52741 427 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 HLA-DRB3P79483 266 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 CT45A1Q5HYN5 189 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 FOXB2Q5VYV0 432 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 MOB1BQ7L9L4 216 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 TMEM219Q86XT9 240 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 LINC00311Q8N616 119 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 C8orf31Q8N9H6 132 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 CT45A3Q8NHU0 189 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 TOMM40LQ969M1 308 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 CREB3L1Q96BA8 519 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 R3HDM4Q96D70 268 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 RIMS4Q9H426 269 aaPredicted RBP12.71□□□□□ -0.37
USHBP1-206ENST00000596436 RAB9BQ9NP90 201 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 OR2S2Q9NQN1 319 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 ABCB10Q9NRK6 738 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 RHBDL2Q9NX52 303 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 GNG12Q9UBI6 72 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 JPT1Q9UK76 154 aa12.71□□□□□ -0.37
USHBP1-206ENST00000596436 AMMECR1Q9Y4X0 333 aaPredicted RBP12.71□□□□□ -0.37
USHBP1-206ENST00000596436 METTL21EPA6NDL7 271 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 GABARAPO95166 117 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 SERPINB10P48595 397 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 SCAND1P57086 179 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 HTD2P86397 168 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 MADCAM1Q13477 382 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 CTF1Q16619 201 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 Q3ZCU0 254 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 MORN2Q502X0 79 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 GPR107Q5VW38 600 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 SLC25A48Q6ZT89 311 aaKnown RBP12.7□□□□□ -0.38
USHBP1-206ENST00000596436 ANKRD13BQ86YJ7 626 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 OR10X1Q8NGY0 326 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 RPEQ96AT9 228 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 GALMQ96C23 342 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 OCSTAMPQ9BR26 566 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 PRSS22Q9GZN4 317 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 PITPNC1Q9UKF7 332 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 ETV7Q9Y603 341 aa12.7□□□□□ -0.38
USHBP1-206ENST00000596436 OOSP1A8MZH6 123 aa12.69□□□□□ -0.38
USHBP1-206ENST00000596436 HSD17B6O14756 317 aa12.69□□□□□ -0.38
USHBP1-206ENST00000596436 FCGR3AP08637 254 aa12.69□□□□□ -0.38
USHBP1-206ENST00000596436 SCTP09683 121 aa12.69□□□□□ -0.38
USHBP1-206ENST00000596436 CD3GP09693 182 aa12.69□□□□□ -0.38
USHBP1-206ENST00000596436 REG1BP48304 166 aa12.69□□□□□ -0.38
USHBP1-206ENST00000596436 Q6ZS46 218 aa12.69□□□□□ -0.38
USHBP1-206ENST00000596436 IL1F10Q8WWZ1 152 aa12.69□□□□□ -0.38
USHBP1-206ENST00000596436 ST6GALNAC6Q969X2 333 aa12.69□□□□□ -0.38
USHBP1-206ENST00000596436 PARP12Q9H0J9 701 aaKnown RBP12.69□□□□□ -0.38
USHBP1-206ENST00000596436 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.69□□□□□ -0.38
USHBP1-206ENST00000596436 ABRACLQ9P1F3 81 aa12.69□□□□□ -0.38
USHBP1-206ENST00000596436 IGKV1-6A0A0C4DH72 117 aa12.68□□□□□ -0.38
USHBP1-206ENST00000596436 SERPINE3A8MV23 424 aa12.68□□□□□ -0.38
USHBP1-206ENST00000596436 YPEL1O60688 119 aa12.68□□□□□ -0.38
USHBP1-206ENST00000596436 CD83Q01151 205 aa12.68□□□□□ -0.38
USHBP1-206ENST00000596436 GPR141Q7Z602 305 aa12.68□□□□□ -0.38
USHBP1-206ENST00000596436 MAFIPQ8WZ33 124 aa12.68□□□□□ -0.38
USHBP1-206ENST00000596436 SLC25A46Q96AG3 418 aa12.68□□□□□ -0.38
USHBP1-206ENST00000596436 YPEL2Q96QA6 119 aa12.68□□□□□ -0.38
USHBP1-206ENST00000596436 OR1A1Q9P1Q5 309 aa12.68□□□□□ -0.38
USHBP1-206ENST00000596436 SPATA2Q9UM82 520 aa12.68□□□□□ -0.38
USHBP1-206ENST00000596436 TRDCB7Z8K6 153 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 BRS3P32247 399 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 ZNF137PP52743 207 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 BLCAPP62952 87 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 ZNF816Q0VGE8 651 aaPredicted RBP12.67□□□□□ -0.38
USHBP1-206ENST00000596436 ARFRP1Q13795 201 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 ZNF260Q3ZCT1 412 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 CDNFQ49AH0 187 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 VAX1Q5SQQ9 334 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 CCDC144NLQ6NUI1 221 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 CROCCP3Q8IVE0 287 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 ODF3L1Q8IXM7 274 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 IZUMO1Q8IYV9 350 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 DRAM1Q8N682 238 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 OR56B4Q8NH76 319 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 ABHD14AQ9BUJ0 271 aa12.67□□□□□ -0.38
USHBP1-206ENST00000596436 ZNF230Q9UIE0 474 aaPredicted RBP12.67□□□□□ -0.38
USHBP1-206ENST00000596436 IGKV1D-8A0A087WSZ0 117 aa12.66□□□□□ -0.38
USHBP1-206ENST00000596436 IGHV1-3A0A0C4DH29 117 aa12.66□□□□□ -0.38
USHBP1-206ENST00000596436 TMEM235A6NFC5 223 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms