RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 NSUN5P1Q3KNT7 163 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 C2orf76Q3KRA6 126 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 LY6G6FQ5SQ64 297 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 C22orf42Q6IC83 251 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 ZNF773Q6PK81 442 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 OR5AU1Q8NGC0 362 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 OR56B1Q8NGI3 324 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 OR2T10Q8NGZ9 312 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 SETD6Q8TBK2 473 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 ARHGAP5-AS1Q96IT6 56 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 EAF1Q96JC9 268 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-205ENST00000595028 YPEL2Q96QA6 119 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 HDHD3Q9BSH5 251 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-205ENST00000595028 RIMS4Q9H426 269 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-205ENST00000595028 C12orf4Q9NQ89 552 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 AK3Q9UIJ7 227 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 LRRC42Q9Y546 428 aa11.99□□□□□ -0.49
TRIM28-205ENST00000595028 PLXNB1O43157 2135 aa11.98□□□□□ -0.49
TRIM28-205ENST00000595028 IFITM5A6NNB3 132 aa11.98□□□□□ -0.49
TRIM28-205ENST00000595028 LANCL1O43813 399 aa11.98□□□□□ -0.49
TRIM28-205ENST00000595028 CD1BP29016 333 aa11.98□□□□□ -0.49
TRIM28-205ENST00000595028 TMEM50BP56557 158 aa11.98□□□□□ -0.49
TRIM28-205ENST00000595028 PLA2G7Q13093 441 aa11.98□□□□□ -0.49
TRIM28-205ENST00000595028 OR2AK2Q8NG84 335 aa11.98□□□□□ -0.49
TRIM28-205ENST00000595028 PECRQ9BY49 303 aa11.98□□□□□ -0.49
TRIM28-205ENST00000595028 ZNF736B4DX44 427 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-205ENST00000595028 MOSP00540 346 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 OPN1MWP04001 364 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 OPN1MW2P0DN77 364 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 OPN1MW3P0DN78 364 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 RAB3BP20337 219 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 HLA-DRB3P79483 266 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 CD83Q01151 205 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 LSAMPQ13449 338 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 PLAC9Q5JTB6 97 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 CENPVQ7Z7K6 275 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-205ENST00000595028 ODF3L1Q8IXM7 274 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 IL1F10Q8WWZ1 152 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 IFI27L2Q9H2X8 130 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 RAB22AQ9UL26 194 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 MGAT4AQ9UM21 535 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 STUB1Q9UNE7 303 aa11.97□□□□□ -0.49
TRIM28-205ENST00000595028 FGF9P31371 208 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-205ENST00000595028 KCTD21Q4G0X4 260 aa11.96□□□□□ -0.49
TRIM28-205ENST00000595028 TCTEX1D4Q5JR98 221 aa11.96□□□□□ -0.49
TRIM28-205ENST00000595028 C10orf99Q6UWK7 81 aa11.96□□□□□ -0.49
TRIM28-205ENST00000595028 ZNF833PQ6ZTB9 187 aa11.96□□□□□ -0.49
TRIM28-205ENST00000595028 NR2C2APQ86WQ0 139 aa11.96□□□□□ -0.49
TRIM28-205ENST00000595028 C1QL4Q86Z23 238 aa11.96□□□□□ -0.49
TRIM28-205ENST00000595028 OR4F17Q8NGA8 305 aa11.96□□□□□ -0.49
TRIM28-205ENST00000595028 OR4X2Q8NGF9 303 aa11.96□□□□□ -0.49
TRIM28-205ENST00000595028 OR4F4Q96R69 305 aa11.96□□□□□ -0.49
TRIM28-205ENST00000595028 CMSS1Q9BQ75 279 aaKnown RBP11.96□□□□□ -0.49
TRIM28-205ENST00000595028 LIN7CQ9NUP9 197 aaKnown RBP11.96□□□□□ -0.49
TRIM28-205ENST00000595028 TXNL4BQ9NX01 149 aaKnown RBP11.96□□□□□ -0.49
TRIM28-205ENST00000595028 SAA2-SAA4A0A096LPE2 208 aa11.95□□□□□ -0.5
TRIM28-205ENST00000595028 A0A0B4J203 849 aa11.95□□□□□ -0.5
TRIM28-205ENST00000595028 NCBP2LA6PVI3 153 aaKnown RBP11.95□□□□□ -0.5
TRIM28-205ENST00000595028 IGHG2P01859 326 aa11.95□□□□□ -0.5
TRIM28-205ENST00000595028 SAA2P0DJI9 122 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-205ENST00000595028 RAB6AP20340 208 aa11.95□□□□□ -0.5
TRIM28-205ENST00000595028 MOGAT2Q3SYC2 334 aa11.95□□□□□ -0.5
TRIM28-205ENST00000595028 SLC35E3Q7Z769 313 aa11.95□□□□□ -0.5
TRIM28-205ENST00000595028 Q8N9W7 124 aa11.95□□□□□ -0.5
TRIM28-205ENST00000595028 OR8H1Q8NGG4 311 aa11.95□□□□□ -0.5
TRIM28-205ENST00000595028 R3HDM4Q96D70 268 aa11.95□□□□□ -0.5
TRIM28-205ENST00000595028 MRPL20Q9BYC9 149 aaKnown RBP11.95□□□□□ -0.5
TRIM28-205ENST00000595028 PARP12Q9H0J9 701 aaKnown RBP11.95□□□□□ -0.5
TRIM28-205ENST00000595028 Q9N2K0 584 aa11.95□□□□□ -0.5
TRIM28-205ENST00000595028 TCRBV4S1A1TA0A5B7 111 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 SMIM30A4D0T7 59 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 PSMB11A5LHX3 300 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 SERPINE3A8MV23 424 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 RAB27BO00194 218 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 MFNGO00587 321 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 ST8SIA5O15466 376 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 GPR12P47775 334 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 OR3A3P47888 321 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 FAM71F2Q6NXP2 309 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 FOXRED2Q8IWF2 684 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 OR10R2Q8NGX6 335 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 CHPT1Q8WUD6 406 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 PTX4Q96A99 478 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 RAB3CQ96E17 227 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 RBMXL1Q96E39 390 aaKnown RBP11.94□□□□□ -0.5
TRIM28-205ENST00000595028 NOL4LQ96MY1 436 aaPredicted RBP11.94□□□□□ -0.5
TRIM28-205ENST00000595028 S1PR3Q99500 378 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 NABP2Q9BQ15 211 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 PLSCR3Q9NRY6 295 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 OR1A1Q9P1Q5 309 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 SLC23A1Q9UHI7 598 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 KCNK7Q9Y2U2 307 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 TSSC4Q9Y5U2 329 aaPredicted RBP11.94□□□□□ -0.5
TRIM28-205ENST00000595028 DNAH3Q8TD57 4116 aa11.94□□□□□ -0.5
TRIM28-205ENST00000595028 A0A1W2PRX2 142 aa11.93□□□□□ -0.5
TRIM28-205ENST00000595028 NOTOA8MTQ0 251 aa11.93□□□□□ -0.5
TRIM28-205ENST00000595028 ITGB1BP1O14713 200 aa11.93□□□□□ -0.5
TRIM28-205ENST00000595028 CD3GP09693 182 aa11.93□□□□□ -0.5
TRIM28-205ENST00000595028 SLC2A2P11168 524 aaPredicted RBP11.93□□□□□ -0.5
TRIM28-205ENST00000595028 GADD45AP24522 165 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms