RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 NKX1-2Q9UD57 310 aaPredicted RBP5.34□□□□□ -1.55
SMAD4-212ENST00000591126 UBQLN2Q9UHD9 624 aa5.34□□□□□ -1.55
SMAD4-212ENST00000591126 V9GYS6 101 aa5.34□□□□□ -1.55
SMAD4-212ENST00000591126 M0R036 132 aa5.34□□□□□ -1.56
SMAD4-212ENST00000591126 AKR1C3P42330 323 aa5.34□□□□□ -1.56
SMAD4-212ENST00000591126 FLI1Q01543 452 aaPredicted RBP5.34□□□□□ -1.56
SMAD4-212ENST00000591126 ENDOGQ14249 297 aaKnown RBP5.34□□□□□ -1.56
SMAD4-212ENST00000591126 FXYD3Q14802 87 aa5.34□□□□□ -1.56
SMAD4-212ENST00000591126 AKIRIN2Q53H80 203 aa5.34□□□□□ -1.56
SMAD4-212ENST00000591126 PDZD9Q8IXQ8 264 aa5.34□□□□□ -1.56
SMAD4-212ENST00000591126 Q8TCH9 128 aa5.34□□□□□ -1.56
SMAD4-212ENST00000591126 IL22RA2Q969J5 263 aa5.34□□□□□ -1.56
SMAD4-212ENST00000591126 YIPF6Q96EC8 236 aa5.34□□□□□ -1.56
SMAD4-212ENST00000591126 ING1Q9UK53 422 aaPredicted RBP5.34□□□□□ -1.56
SMAD4-212ENST00000591126 OR51B2Q9Y5P1 312 aa5.34□□□□□ -1.56
SMAD4-212ENST00000591126 CEACAM18A8MTB9 384 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 DEFB108AA8MXU0 73 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 C4orf51C9J302 202 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 SMLR1H3BR10 107 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 NPFFO15130 113 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 SSX5O60225 188 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 CLN5O75503 358 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 UPK1BO75841 260 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 PLA2G2AP14555 144 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 HCCSP53701 268 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 ZP1P60852 638 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 ERVK11-1P61568 191 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 ITLN2Q8WWU7 325 aaPredicted RBP5.33□□□□□ -1.56
SMAD4-212ENST00000591126 OR5M11Q96RB7 305 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 TECRQ9NZ01 308 aaKnown RBP5.33□□□□□ -1.56
SMAD4-212ENST00000591126 ABCA7Q8IZY2 2146 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 CHD5Q8TDI0 1954 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 PDCD11Q14690 1871 aaKnown RBP5.33□□□□□ -1.56
SMAD4-212ENST00000591126 CDS2O95674 445 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 CTSBP07858 339 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 UBE2E1P51965 193 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 CFAP161Q6P656 301 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 LYG2Q86SG7 212 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 SRSF8Q9BRL6 282 aaKnown RBP5.33□□□□□ -1.56
SMAD4-212ENST00000591126 IGKV1D-42A0A075B6H8 117 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 PINLYPA6NC86 204 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 MEIS3P1A6NDR6 274 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 A6NIN4 97 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 CTDSPLO15194 276 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 NBR2O15453 112 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 OR7C2O60412 319 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 NPIPB7O75200 414 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 GIFP27352 417 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 RPS27P42677 84 aaKnown RBP5.33□□□□□ -1.56
SMAD4-212ENST00000591126 TEX45Q8NA69 505 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 SMIM4Q8WVI0 70 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 SPACA5Q96QH8 159 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 QTRT1Q9BXR0 403 aaKnown RBP5.33□□□□□ -1.56
SMAD4-212ENST00000591126 FAM53CQ9NYF3 392 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 TMEM56-RWDD3S4R434 201 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 TRAV40A0A0B4J280 105 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 TMEM272A0A1B0GTI8 110 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 PRSS23O95084 383 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 ZIC2O95409 532 aaPredicted RBP5.33□□□□□ -1.56
SMAD4-212ENST00000591126 IGKV3-15P01624 115 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 AMBPP02760 352 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 PRTN3P24158 256 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 HRH1P35367 487 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 TM4SF20Q53R12 229 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 SCARB1Q8WTV0 552 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 NRTNQ99748 197 aa5.33□□□□□ -1.56
SMAD4-212ENST00000591126 MRPL13Q9BYD1 178 aaKnown RBP5.33□□□□□ -1.56
SMAD4-212ENST00000591126 IGHV3-43A0A0B4J1X8 118 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 GEMIN2O14893 280 aaKnown RBP5.32□□□□□ -1.56
SMAD4-212ENST00000591126 IGHV3-43DP0DP04 118 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 HABP2Q14520 560 aaPredicted RBP5.32□□□□□ -1.56
SMAD4-212ENST00000591126 ZNF474Q6S9Z5 364 aaPredicted RBP5.32□□□□□ -1.56
SMAD4-212ENST00000591126 OVCH2Q7RTZ1 564 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 ARPC1AQ92747 370 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 VOPP1Q96AW1 172 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 SPRY4Q9C004 299 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 WDR13Q9H1Z4 485 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 HIGD1AQ9Y241 93 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 FOXA2Q9Y261 457 aaPredicted RBP5.32□□□□□ -1.56
SMAD4-212ENST00000591126 EREGO14944 169 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 NTN1O95631 604 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 PPYP01298 95 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 SEMG1P04279 462 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 PGA5P0DJD9 388 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 ZNF146Q15072 292 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 OR2B11Q5JQS5 317 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 C1orf100Q5SVJ3 147 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 BCDIN3DQ7Z5W3 292 aaKnown RBP5.32□□□□□ -1.56
SMAD4-212ENST00000591126 HOGA1Q86XE5 327 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 BVESQ8NE79 360 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 RNF141Q8WVD5 230 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 PGLYRP3Q96LB9 341 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 NPAS1Q99742 590 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 SSX3Q99909 188 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 RANGRFQ9HD47 186 aaPredicted RBP5.32□□□□□ -1.56
SMAD4-212ENST00000591126 FAM206AQ9NX38 181 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 NPAP1Q9NZP6 1156 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 GOLT1BQ9Y3E0 138 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 FAM186AA6NE01 2351 aa5.32□□□□□ -1.56
SMAD4-212ENST00000591126 SPTA1P02549 2419 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms