RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 TMPRSS13Q9BYE2 586 aa8.8□□□□□ -1
SS18-213ENST00000579640 SIRPDQ9H106 197 aa8.8□□□□□ -1
SS18-213ENST00000579640 GHITMQ9H3K2 345 aa8.8□□□□□ -1
SS18-213ENST00000579640 OCEL1Q9H607 264 aa8.8□□□□□ -1
SS18-213ENST00000579640 HEXA-AS1Q9H8Q6 139 aa8.8□□□□□ -1
SS18-213ENST00000579640 RBM7Q9Y580 266 aaKnown RBP8.8□□□□□ -1
SS18-213ENST00000579640 NUBP2Q9Y5Y2 271 aa8.8□□□□□ -1
SS18-213ENST00000579640 TCRBP04435 133 aa8.79□□□□□ -1
SS18-213ENST00000579640 IGHV4-31P0DP07 118 aa8.79□□□□□ -1
SS18-213ENST00000579640 FXYD4P59646 89 aa8.79□□□□□ -1
SS18-213ENST00000579640 OXA1LQ15070 435 aa8.79□□□□□ -1
SS18-213ENST00000579640 MSMO1Q15800 293 aa8.79□□□□□ -1
SS18-213ENST00000579640 TRIM16LQ309B1 348 aa8.79□□□□□ -1
SS18-213ENST00000579640 DCAF12L2Q5VW00 463 aa8.79□□□□□ -1
SS18-213ENST00000579640 NCR3LG1Q68D85 454 aa8.79□□□□□ -1
SS18-213ENST00000579640 PLET1Q6UQ28 207 aa8.79□□□□□ -1
SS18-213ENST00000579640 SLC38A6Q8IZM9 456 aa8.79□□□□□ -1
SS18-213ENST00000579640 LINC00311Q8N616 119 aa8.79□□□□□ -1
SS18-213ENST00000579640 ZNF439Q8NDP4 499 aa8.79□□□□□ -1
SS18-213ENST00000579640 OR9G1Q8NH87 305 aa8.79□□□□□ -1
SS18-213ENST00000579640 ZNF596Q8TC21 504 aa8.79□□□□□ -1
SS18-213ENST00000579640 ZFAND1Q8TCF1 268 aa8.79□□□□□ -1
SS18-213ENST00000579640 CHPT1Q8WUD6 406 aa8.79□□□□□ -1
SS18-213ENST00000579640 ZNF486Q96H40 463 aaPredicted RBP8.79□□□□□ -1
SS18-213ENST00000579640 ABHD14AQ9BUJ0 271 aa8.79□□□□□ -1
SS18-213ENST00000579640 FXYD6Q9H0Q3 95 aa8.79□□□□□ -1
SS18-213ENST00000579640 ITGB1BP2Q9UKP3 347 aa8.79□□□□□ -1
SS18-213ENST00000579640 PSG11Q9UQ72 335 aa8.79□□□□□ -1
SS18-213ENST00000579640 CR1P17927 2039 aa8.78□□□□□ -1
SS18-213ENST00000579640 ARHGAP32A7KAX9 2087 aa8.78□□□□□ -1
SS18-213ENST00000579640 J3QLI3 93 aa8.78□□□□□ -1
SS18-213ENST00000579640 TOX4O94842 621 aa8.78□□□□□ -1
SS18-213ENST00000579640 MMP9P14780 707 aa8.78□□□□□ -1
SS18-213ENST00000579640 PGAM2P15259 253 aa8.78□□□□□ -1
SS18-213ENST00000579640 PRRX1P54821 245 aa8.78□□□□□ -1
SS18-213ENST00000579640 CYB5R2Q6BCY4 276 aa8.78□□□□□ -1
SS18-213ENST00000579640 SLC25A48Q6ZT89 311 aaKnown RBP8.78□□□□□ -1
SS18-213ENST00000579640 VMO1Q7Z5L0 202 aa8.78□□□□□ -1
SS18-213ENST00000579640 ABHD12Q8N2K0 398 aa8.78□□□□□ -1
SS18-213ENST00000579640 MARCH1Q8TCQ1 289 aa8.78□□□□□ -1
SS18-213ENST00000579640 TOMM40LQ969M1 308 aa8.78□□□□□ -1
SS18-213ENST00000579640 MRGPRFQ96AM1 343 aa8.78□□□□□ -1
SS18-213ENST00000579640 CREB3L1Q96BA8 519 aa8.78□□□□□ -1
SS18-213ENST00000579640 MSI2Q96DH6 328 aaKnown RBP8.78□□□□□ -1
SS18-213ENST00000579640 AKR1E2Q96JD6 320 aa8.78□□□□□ -1
SS18-213ENST00000579640 CLEC7AQ9BXN2 247 aa8.78□□□□□ -1
SS18-213ENST00000579640 SLC5A7Q9GZV3 580 aa8.78□□□□□ -1
SS18-213ENST00000579640 HIF1ANQ9NWT6 349 aa8.78□□□□□ -1
SS18-213ENST00000579640 GPR132Q9UNW8 380 aa8.78□□□□□ -1
SS18-213ENST00000579640 ABCA2Q9BZC7 2435 aa8.78□□□□□ -1
SS18-213ENST00000579640 MAST4O15021 2626 aa8.78□□□□□ -1
SS18-213ENST00000579640 IGHV2-26A0A0B4J1V2 119 aa8.77□□□□□ -1
SS18-213ENST00000579640 IGKV1D-13A0A0B4J2D9 117 aa8.77□□□□□ -1
SS18-213ENST00000579640 J3QR06 171 aa8.77□□□□□ -1
SS18-213ENST00000579640 TOR1AO14656 332 aa8.77□□□□□ -1
SS18-213ENST00000579640 TGFAP01135 160 aa8.77□□□□□ -1
SS18-213ENST00000579640 CTSDP07339 412 aaPredicted RBP8.77□□□□□ -1
SS18-213ENST00000579640 OR8U9P0C7N5 309 aa8.77□□□□□ -1
SS18-213ENST00000579640 IGKV1-13P0DP09 117 aa8.77□□□□□ -1
SS18-213ENST00000579640 RAG2P55895 527 aa8.77□□□□□ -1
SS18-213ENST00000579640 FAM53AQ6NSI3 398 aaPredicted RBP8.77□□□□□ -1
SS18-213ENST00000579640 CCBE1Q6UXH8 406 aaPredicted RBP8.77□□□□□ -1
SS18-213ENST00000579640 ZBTB34Q8NCN2 500 aa8.77□□□□□ -1
SS18-213ENST00000579640 MAPK1IP1LQ8NDC0 245 aa8.77□□□□□ -1
SS18-213ENST00000579640 BEND2Q8NDZ0 799 aa8.77□□□□□ -1
SS18-213ENST00000579640 OR11H6Q8NGC7 330 aa8.77□□□□□ -1
SS18-213ENST00000579640 OR8U1Q8NH10 309 aa8.77□□□□□ -1
SS18-213ENST00000579640 SECTM1Q8WVN6 248 aa8.77□□□□□ -1
SS18-213ENST00000579640 AGMATQ9BSE5 352 aa8.77□□□□□ -1
SS18-213ENST00000579640 RSRP1Q9BUV0 290 aa8.77□□□□□ -1
SS18-213ENST00000579640 PARP12Q9H0J9 701 aaKnown RBP8.77□□□□□ -1
SS18-213ENST00000579640 C20orf85Q9H1P6 137 aa8.77□□□□□ -1
SS18-213ENST00000579640 SIRT7Q9NRC8 400 aa8.77□□□□□ -1
SS18-213ENST00000579640 PIPOXQ9P0Z9 390 aa8.77□□□□□ -1
SS18-213ENST00000579640 GAB2Q9UQC2 676 aa8.77□□□□□ -1
SS18-213ENST00000579640 C14orf166Q9Y224 244 aaKnown RBP8.77□□□□□ -1
SS18-213ENST00000579640 GPR31O00270 319 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 ST8SIA5O15466 376 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 H2AFB2P0C5Z0 115 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 IL3RAP26951 378 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 S100GP29377 79 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 GNG10P50151 68 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 ZNF134P52741 427 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 CT45A1Q5HYN5 189 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 CMTM1Q8IZ96 169 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 CENPSQ8N2Z9 138 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 ZNF645Q8N7E2 425 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.77□□□□□ -1.01
SS18-213ENST00000579640 CT45A3Q8NHU0 189 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 LEAP2Q969E1 77 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 TBX15Q96SF7 602 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 MARVELD1Q9BSK0 173 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 PCGF1Q9BSM1 259 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 OR2D2Q9H210 308 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 IFI27L2Q9H2X8 130 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 NUDT15Q9NV35 164 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 ZNF221Q9UK13 617 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 VSIG4Q9Y279 399 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 AMMECR1Q9Y4X0 333 aaPredicted RBP8.77□□□□□ -1.01
SS18-213ENST00000579640 AUP1Q9Y679 476 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms