RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 PRORYQ9H606 182 aa3.23□□□□□ -1.89
NUP88-213ENST00000576862 ACOT13Q9NPJ3 140 aa3.23□□□□□ -1.89
NUP88-213ENST00000576862 SAR1AQ9NR31 198 aa3.23□□□□□ -1.89
NUP88-213ENST00000576862 TAS2R13Q9NYV9 303 aa3.23□□□□□ -1.89
NUP88-213ENST00000576862 DEC1Q9P2X7 70 aa3.23□□□□□ -1.89
NUP88-213ENST00000576862 ZNF225Q9UK10 706 aa3.23□□□□□ -1.89
NUP88-213ENST00000576862 SLC7A11Q9UPY5 501 aa3.23□□□□□ -1.89
NUP88-213ENST00000576862 TP53TG5Q9Y2B4 290 aa3.23□□□□□ -1.89
NUP88-213ENST00000576862 GOLT1BQ9Y3E0 138 aa3.23□□□□□ -1.89
NUP88-213ENST00000576862 CHD7Q9P2D1 2997 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 PQLC2LA1A4F0 135 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 CCDC22O60826 627 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 ZNF780AO75290 641 aaPredicted RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 SLC25A14O95258 325 aaPredicted RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 CNIH1O95406 144 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 SOD1P00441 154 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 OXTP01178 125 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 IFNA1P01562 189 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 IGHV4-34P06331 123 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 ZNF30P17039 623 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 RCC1P18754 421 aaPredicted RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 HIST1H1TP22492 207 aaPredicted RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 SERPINB5P36952 375 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 CEACAM6P40199 344 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 PMELP40967 661 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 PSMD8P48556 350 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 FOXA1P55317 472 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 BTN3A2P78410 334 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 ELF3P78545 371 aaPredicted RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 HTR4Q13639 388 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 FAM53BQ14153 422 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 OXA1LQ15070 435 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 TRAM1Q15629 374 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 PRSS8Q16651 343 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 ACSBG2Q5FVE4 666 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 ZNF678Q5SXM1 525 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 HBMQ6B0K9 141 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 TRIM40Q6P9F5 258 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 SBSNQ6UWP8 590 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 RNF165Q6ZSG1 346 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 THOC6Q86W42 341 aaKnown RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 ANGPTL5Q86XS5 388 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 SVOPLQ8N434 492 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 SPICQ8N5J4 248 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 EID2Q8N6I1 236 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 ARIH2OSQ8N7S6 290 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 OR10G3Q8NGC4 313 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 OR10K1Q8NGX5 313 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 STOML3Q8TAV4 291 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 STAG3L4Q8TBR4 150 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 HAVCR2Q8TDQ0 301 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 CHCHD10Q8WYQ3 142 aaPredicted RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 PDXPQ96GD0 296 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 BTF3L4Q96K17 158 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 PGLYRP4Q96LB8 373 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 ZNF488Q96MN9 340 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 ZNF681Q96N22 645 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 PFDN5Q99471 154 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 DOK1Q99704 481 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 KCTD14Q9BQ13 255 aaPredicted RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 RIOK2Q9BVS4 552 aaKnown RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 NUDT9Q9BW91 350 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 TMEM59Q9BXS4 323 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 PRO3102Q9H379 93 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 MAP1LC3AQ9H492 121 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 ZNF385DQ9H6B1 395 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 UBE2ZQ9H832 354 aaPredicted RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 SIAEQ9HAT2 523 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 TMEM138Q9NPI0 162 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 GNPTGQ9UJJ9 305 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 PCTPQ9UKL6 214 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 SIGLEC9Q9Y336 463 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 NEUROG3Q9Y4Z2 214 aa3.22□□□□□ -1.89
NUP88-213ENST00000576862 MKI67P46013 3256 aaKnown RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 NYNRINQ9P2P1 1898 aaKnown RBP3.22□□□□□ -1.89
NUP88-213ENST00000576862 PTPRSQ13332 1948 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 A6NDN8 102 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 ZNF878C9JN71 531 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 F5H5K5 113 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 CCL21O00585 134 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 PHYHO14832 338 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 SLC22A1O15245 554 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 ENSAO43768 121 aaKnown RBP3.21□□□□□ -1.9
NUP88-213ENST00000576862 MGRN1O60291 552 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 EIF3GO75821 320 aaKnown RBP eCLIP3.21□□□□□ -1.9
NUP88-213ENST00000576862 CYB5R3P00387 301 aaPredicted RBP3.21□□□□□ -1.9
NUP88-213ENST00000576862 INSP01308 110 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 OR5AL1P0C617 328 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 OR10J4P0C629 311 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 ACSM4P0C7M7 580 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 MYL12AP19105 171 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 CCR7P32248 378 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 GPX4P36969 197 aaPredicted RBP3.21□□□□□ -1.9
NUP88-213ENST00000576862 IFNGR2P38484 337 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 RAB2AP61019 212 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 IL5RAQ01344 420 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 EBI3Q14213 229 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 IRF4Q15306 451 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 VAX1Q5SQQ9 334 aa3.21□□□□□ -1.9
NUP88-213ENST00000576862 HENMT1Q5T8I9 393 aaKnown RBP3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms