RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PBDC1Q9BVG4 233 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 OR14J1Q9UGF5 321 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 RBM7Q9Y580 266 aaKnown RBP8.5□□□□□ -1.05
VPS53-220ENST00000576149 HSBP1L1C9JCN9 74 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 CEACAM1P13688 526 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 TUBG1P23258 451 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 CEBPDP49716 269 aaPredicted RBP8.49□□□□□ -1.05
VPS53-220ENST00000576149 RPL23AP62750 156 aaKnown RBP8.49□□□□□ -1.05
VPS53-220ENST00000576149 FOXF2Q12947 444 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 IZUMO4Q1ZYL8 232 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 ACSF3Q4G176 576 aaPredicted RBP8.49□□□□□ -1.05
VPS53-220ENST00000576149 KDF1Q8NAX2 398 aaPredicted RBP8.49□□□□□ -1.05
VPS53-220ENST00000576149 SNIP1Q8TAD8 396 aaKnown RBP8.49□□□□□ -1.05
VPS53-220ENST00000576149 ATP5SQ99766 215 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 ABHD14AQ9BUJ0 271 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 CXXC4Q9H2H0 198 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 TUBG2Q9NRH3 451 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 LIN7CQ9NUP9 197 aaKnown RBP8.49□□□□□ -1.05
VPS53-220ENST00000576149 TMEM30CPA0ZSE6 113 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 WDR1O75083 606 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 IGKV1-5P01602 117 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 BMI1P35226 326 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 CD200P41217 278 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 SLC25A24Q6NUK1 477 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 ZNF826PQ6ZT77 177 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 CXorf67Q86X51 503 aaPredicted RBP8.49□□□□□ -1.05
VPS53-220ENST00000576149 DRAM1Q8N682 238 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 RNASE11Q8TAA1 199 aaKnown RBP8.49□□□□□ -1.05
VPS53-220ENST00000576149 CACNG5Q9UF02 275 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 MLXQ9UH92 298 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 KCNS2Q9ULS6 477 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 PRELID3BQ9Y3B1 194 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 DMRT1Q9Y5R6 373 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 WSB1Q9Y6I7 421 aa8.49□□□□□ -1.05
VPS53-220ENST00000576149 WNT9BO14905 357 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 IGLV1-44P01699 117 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 CECR9P0C854 216 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 KITLGP21583 273 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 PAX6P26367 422 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 SULT1A1P50225 295 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 SP5Q6BEB4 398 aaPredicted RBP8.48□□□□□ -1.05
VPS53-220ENST00000576149 SPSB3Q6PJ21 355 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 ETV3LQ6ZN32 361 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 RXFP4Q8TDU9 374 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 CLUHP3Q96NS8 147 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 SLC35B3Q9H1N7 401 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 SMDT1Q9H4I9 107 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 SMCO4Q9NRQ5 59 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 KCNIP1Q9NZI2 227 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 FBXO7Q9Y3I1 522 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 MEX3AA1L020 520 aaKnown RBP8.48□□□□□ -1.05
VPS53-220ENST00000576149 COLCA2A8K830 154 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 AHRRA9YTQ3 701 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 H3BP45 60 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 SYNGR2O43760 224 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 TIMM8AO60220 97 aaPredicted RBP8.48□□□□□ -1.05
VPS53-220ENST00000576149 TNFSF13O75888 250 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 DFFBO76075 338 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 CCL20P78556 96 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 RUNX1Q01196 453 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 DEFB109BQ30KR1 87 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 SLC35E4Q6ICL7 350 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 WDR82Q6UXN9 313 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 ACP7Q6ZNF0 438 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 Q6ZR03 302 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 OR1L1Q8NH94 360 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 GALMQ96C23 342 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 BCL2L14Q9BZR8 327 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 DKK4Q9UBT3 224 aa8.48□□□□□ -1.05
VPS53-220ENST00000576149 A0A1B0GV50 99 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 BTBD17A6NE02 478 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 C12orf77C9JDV5 145 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 CEACAM4O75871 244 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 OR3A1P47881 315 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 TAS2R30P59541 319 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 ZNF610Q8N9Z0 462 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 ZBTB34Q8NCN2 500 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 STARD4Q96DR4 205 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 TAAR6Q96RI8 345 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 HIPK2Q9H2X6 1198 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 KCNJ16Q9NPI9 418 aa8.47□□□□□ -1.05
VPS53-220ENST00000576149 ZNF71Q9NQZ8 489 aaPredicted RBP8.47□□□□□ -1.05
VPS53-220ENST00000576149 OOEPA6NGQ2 149 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 RNF212BA8MTL3 300 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 NDUFA2O43678 99 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 CGAP01215 116 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 CRYBA1P05813 215 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 FABP6P51161 128 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 HOXA4Q00056 320 aaPredicted RBP8.46□□□□□ -1.05
VPS53-220ENST00000576149 AESQ08117 197 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 TMEM267Q0VDI3 215 aaPredicted RBP8.46□□□□□ -1.05
VPS53-220ENST00000576149 ZNF718Q3SXZ3 478 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 AWAT1Q58HT5 328 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 PRAMEF6Q5VXH4 476 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 MBNL2Q5VZF2 373 aaKnown RBP8.46□□□□□ -1.05
VPS53-220ENST00000576149 ZNF645Q8N7E2 425 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 C15orf54Q8N8G6 183 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 COQ2Q96H96 371 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 RARRES2Q99969 163 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 TOLLIPQ9H0E2 274 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms