RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 FAM25GB3EWG6 89 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 XKRYO14609 159 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 MAGEB4O15481 346 aaPredicted RBP5.67□□□□□ -1.5
VPS53-217ENST00000575100 DLEU1O43261 78 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 TGOLN2O43493 480 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 CLDN14O95500 239 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 HOXD4P09016 255 aaPredicted RBP5.67□□□□□ -1.5
VPS53-217ENST00000575100 VEGFCP49767 419 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 FOXG1P55316 489 aaPredicted RBP5.67□□□□□ -1.5
VPS53-217ENST00000575100 SSBP2P81877 361 aaPredicted RBP5.67□□□□□ -1.5
VPS53-217ENST00000575100 EMX1Q04741 257 aaPredicted RBP5.67□□□□□ -1.5
VPS53-217ENST00000575100 FOXF2Q12947 444 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 TAL2Q16559 108 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 OR2B11Q5JQS5 317 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 ZNF585AQ6P3V2 769 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 C9orf139Q6ZV77 190 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 LYG2Q86SG7 212 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 C9orf106Q8NAJ2 232 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 ZSCAN4Q8NAM6 433 aaPredicted RBP5.67□□□□□ -1.5
VPS53-217ENST00000575100 OR6K6Q8NGW6 343 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 OR51F2Q8NH61 342 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 TOMM40LQ969M1 308 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 SARAFQ96BY9 339 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 ZHX1-C8orf76Q96EF9 292 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 Q96MT0 163 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 OR5M11Q96RB7 305 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 TBX5Q99593 518 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 MND1Q9BWT6 205 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 TTTY10Q9BZA0 68 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 RNF122Q9H9V4 155 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 GLS2Q9UI32 602 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 MCTS1Q9ULC4 181 aaKnown RBP5.67□□□□□ -1.5
VPS53-217ENST00000575100 CCDC168Q8NDH2 2452 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 CSMD1Q96PZ7 3565 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 IGHV2-70DA0A0C4DH43 119 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 hDV102S1A0JD36 115 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 C19orf84I3L1E1 186 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 FGF16O43320 207 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 WNT11O96014 354 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 PTHP01270 115 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 IFNA21P01568 189 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 SLC25A1P53007 311 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 GABARAPL2P60520 117 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 SEC61A1P61619 476 aaKnown RBP5.67□□□□□ -1.5
VPS53-217ENST00000575100 SRSF9Q13242 221 aaKnown RBP eCLIP5.67□□□□□ -1.5
VPS53-217ENST00000575100 TSPO2Q5TGU0 170 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 DNM1P34Q6PK57 102 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 ALKBH3Q96Q83 286 aaPredicted RBP5.67□□□□□ -1.5
VPS53-217ENST00000575100 NIT2Q9NQR4 276 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 SCN3BQ9NY72 215 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 AMDHD2Q9Y303 409 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 TPRKBQ9Y3C4 175 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 RPL36Q9Y3U8 105 aaKnown RBP5.67□□□□□ -1.5
VPS53-217ENST00000575100 UGT2A1Q9Y4X1 527 aa5.67□□□□□ -1.5
VPS53-217ENST00000575100 NKX6-3A6NJ46 265 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 ZNF726A6NNF4 738 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.66□□□□□ -1.5
VPS53-217ENST00000575100 RENP00797 406 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 IGHG1P01857 330 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 LIMS3P0CW19 117 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 LIMS4P0CW20 117 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 PIPP12273 146 aaPredicted RBP5.66□□□□□ -1.5
VPS53-217ENST00000575100 AGTR1P30556 359 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 KRTAP10-9P60411 292 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 LAGE3Q14657 143 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 GUSBP1Q15486 140 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 NEDD8Q15843 81 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 ZNF773Q6PK81 442 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 Q6ZSN1 163 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 CHMP1BQ7LBR1 199 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 PRSS48Q7RTY5 328 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 DOLPP1Q86YN1 238 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 C20orf196Q8IYI0 205 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 OR2T4Q8NH00 348 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 TMEM54Q969K7 222 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 FLYWCH2Q96CP2 140 aaKnown RBP5.66□□□□□ -1.5
VPS53-217ENST00000575100 AMELYQ99218 206 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 ISG20L2Q9H9L3 353 aaKnown RBP5.66□□□□□ -1.5
VPS53-217ENST00000575100 ACOT13Q9NPJ3 140 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 BIN3Q9NQY0 253 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 SLC7A10Q9NS82 523 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 GLTPQ9NZD2 209 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 A0A087WZ39 114 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 MPDU1O75352 247 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 LALBAP00709 142 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 IGHA1P01876 353 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 ARR3P36575 388 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 CEACAM6P40199 344 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 RAP1BP61224 184 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 RAP1AP62834 184 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 ZNF85Q03923 595 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 GGTLC2Q14390 218 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 MPPED2Q15777 294 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 FFAR4Q5NUL3 377 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 LPCAT3Q6P1A2 487 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 STAC2Q6ZMT1 411 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 AAED1Q7RTV5 226 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 CALHM1Q8IU99 346 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 NEXN-AS1Q8NBZ9 246 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 ZNF485Q8NCK3 441 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms