RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TMEM95Q3KNT9 176 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 HES5Q5TA89 166 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 STEAP3Q658P3 488 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 SIGIRRQ6IA17 410 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 SLC25A48Q6ZT89 311 aaKnown RBP6.46□□□□□ -1.38
VPS53-214ENST00000572607 IZUMO1Q8IYV9 350 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 LYG1Q8N1E2 194 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 OR2AK2Q8NG84 335 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 OR4F17Q8NGA8 305 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 OR5AU1Q8NGC0 362 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 OR51D1Q8NGF3 324 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 OR4X2Q8NGF9 303 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 OR52L2PQ8NGH6 319 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 OR2T10Q8NGZ9 312 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 RTN4IP1Q8WWV3 396 aaPredicted RBP6.46□□□□□ -1.38
VPS53-214ENST00000572607 IL1F10Q8WWZ1 152 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 CFHR4Q92496 578 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 FAM3DQ96BQ1 224 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 OR4F4Q96R69 305 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 ABHD14AQ9BUJ0 271 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 WNT10AQ9GZT5 417 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 LPAR5Q9H1C0 372 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 KCNK15Q9H427 330 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 DSCAML1Q8TD84 2053 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 IGHV3-72A0A0B4J1Y9 119 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 TRAV1-2A0A0B4J238 106 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 METTL21EPA6NDL7 271 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 SH2D7A6NKC9 451 aaPredicted RBP6.45□□□□□ -1.38
VPS53-214ENST00000572607 NCBP2LA6PVI3 153 aaKnown RBP6.45□□□□□ -1.38
VPS53-214ENST00000572607 SERPINE3A8MV23 424 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 SOCS1O15524 211 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 YPEL1O60688 119 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 MOSP00540 346 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 CD28P10747 220 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 CD37P11049 281 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 RAB3BP20337 219 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 GADD45AP24522 165 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 CD1BP29016 333 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 VEGFCP49767 419 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 CLDN12P56749 244 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 SLC35B1P78383 322 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 QRFPP83859 136 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 HMGN3Q15651 99 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 C2orf76Q3KRA6 126 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 MORN2Q502X0 79 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 KHDC1LQ5JSQ8 128 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 UBE2UQ5VVX9 321 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 C22orf42Q6IC83 251 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 NDUFA11Q86Y39 141 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 FOXRED2Q8IWF2 684 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 SPARTQ8N0X7 666 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 OR8H1Q8NGG4 311 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 YPEL2Q96QA6 119 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 GFI1Q99684 422 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 RASL11BQ9BPW5 248 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 C12orf4Q9NQ89 552 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 AK3Q9UIJ7 227 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 RAB22AQ9UL26 194 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 HSF4Q9ULV5 492 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 SSR3Q9UNL2 185 aa6.45□□□□□ -1.38
VPS53-214ENST00000572607 RRP15Q9Y3B9 282 aaKnown RBP6.45□□□□□ -1.38
VPS53-214ENST00000572607 NBEAL2Q6ZNJ1 2754 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 A0A0A6YYD4 124 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 TCRBV4S1A1TA0A5B7 111 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 PSMB11A5LHX3 300 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 IFITM5A6NNB3 132 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 SLC31A2O15432 143 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 HSPA12AO43301 675 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 LANCL1O43813 399 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 EIF4EBP3O60516 100 aaPredicted RBP6.44□□□□□ -1.38
VPS53-214ENST00000572607 NAPSAO96009 420 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 CD3GP09693 182 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 PF4V1P10720 104 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 ZBTB25P24278 435 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 PPP1CCP36873 323 aaKnown RBP6.44□□□□□ -1.38
VPS53-214ENST00000572607 ZNF137PP52743 207 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 HLA-DRB3P79483 266 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 EBI3Q14213 229 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 GNMTQ14749 295 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 CT45A1Q5HYN5 189 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 LY6G6FQ5SQ64 297 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 FAM53AQ6NSI3 398 aaPredicted RBP6.44□□□□□ -1.38
VPS53-214ENST00000572607 CDPF1Q6NVV7 123 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 ZNF773Q6PK81 442 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 CD200R1LQ6Q8B3 271 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 SLC35E3Q7Z769 313 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 FAM89BQ8N5H3 189 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 C5orf56Q8N8D9 126 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 ZNF439Q8NDP4 499 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 CT45A3Q8NHU0 189 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 CHPT1Q8WUD6 406 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 R3HDM4Q96D70 268 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 RAB3CQ96E17 227 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 ARHGAP5-AS1Q96IT6 56 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 EAF1Q96JC9 268 aaPredicted RBP6.44□□□□□ -1.38
VPS53-214ENST00000572607 S1PR3Q99500 378 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 CITED2Q99967 270 aaPredicted RBP6.44□□□□□ -1.38
VPS53-214ENST00000572607 CMSS1Q9BQ75 279 aaKnown RBP6.44□□□□□ -1.38
VPS53-214ENST00000572607 VCX3AQ9NNX9 186 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 LIN7CQ9NUP9 197 aaKnown RBP6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms