RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SELEP16581 610 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 PMP22Q01453 160 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 GABRA6Q16445 453 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 KIAA2026Q5HYC2 2103 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 TMEM178AQ8NBL3 297 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 HES4Q9HCC6 221 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 TMEM9BQ9NQ34 198 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 LOC102723971A0A1B0GUV8 181 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 LYZL6O75951 148 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 OR2B8PP59922 312 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 TGFBR3Q03167 851 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 RBMS3Q6XE24 437 aaKnown RBP19.19■□□□□ 0.66
VPS53-211ENST00000571805 C1QL4Q86Z23 238 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 VSIRQ9H7M9 311 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 OR14J1Q9UGF5 321 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 A0A087WWC5 75 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 ZNF727A8MUV8 499 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 PSPNO60542 156 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 CEBPDP49716 269 aaPredicted RBP19.19■□□□□ 0.66
VPS53-211ENST00000571805 FABP9Q0Z7S8 132 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 SCGB1C1Q8TD33 95 aa19.19■□□□□ 0.66
VPS53-211ENST00000571805 C1QTNF9BB2RNN3 333 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 HAND1O96004 215 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 TAGLN2P37802 199 aaKnown RBP19.18■□□□□ 0.66
VPS53-211ENST00000571805 UBE2KP61086 200 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 DLK1P80370 383 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 GTF3C1Q12789 2109 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 GCNT2Q8N0V5 402 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 FGFRL1Q8N441 504 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 PSMG3Q9BT73 122 aaPredicted RBP19.18■□□□□ 0.66
VPS53-211ENST00000571805 CLCF1Q9UBD9 225 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 TMEM210A6NLX4 147 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 PPIHO43447 177 aaKnown RBP19.18■□□□□ 0.66
VPS53-211ENST00000571805 OR8U8P0C7N1 319 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 MPV17P39210 176 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 TNFSF10P50591 281 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 ZNF726P1Q15940 193 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 LRRC75BQ2VPJ9 315 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 OR10G4Q8NGN3 311 aa19.18■□□□□ 0.66
VPS53-211ENST00000571805 S100A8P05109 93 aa19.17■□□□□ 0.66
VPS53-211ENST00000571805 SOX8P57073 446 aa19.17■□□□□ 0.66
VPS53-211ENST00000571805 KLF14Q8TD94 323 aaPredicted RBP19.17■□□□□ 0.66
VPS53-211ENST00000571805 MBD3L1Q8WWY6 194 aa19.17■□□□□ 0.66
VPS53-211ENST00000571805 TVP23CQ96ET8 276 aa19.17■□□□□ 0.66
VPS53-211ENST00000571805 SEBOXQ9HB31 216 aaPredicted RBP19.17■□□□□ 0.66
VPS53-211ENST00000571805 URB1O60287 2271 aaKnown RBP19.17■□□□□ 0.66
VPS53-211ENST00000571805 INO80CQ6PI98 192 aaPredicted RBP19.17■□□□□ 0.66
VPS53-211ENST00000571805 C11orf53Q8IXP5 236 aa19.17■□□□□ 0.66
VPS53-211ENST00000571805 OR1L1Q8NH94 360 aa19.17■□□□□ 0.66
VPS53-211ENST00000571805 TINAGQ9UJW2 476 aa19.17■□□□□ 0.66
VPS53-211ENST00000571805 BDP1A6H8Y1 2624 aa19.16■□□□□ 0.66
VPS53-211ENST00000571805 HBG1P69891 147 aa19.16■□□□□ 0.66
VPS53-211ENST00000571805 HBG2P69892 147 aa19.16■□□□□ 0.66
VPS53-211ENST00000571805 CTAG1AP78358 180 aa19.16■□□□□ 0.66
VPS53-211ENST00000571805 BCL2L14Q9BZR8 327 aa19.16■□□□□ 0.66
VPS53-211ENST00000571805 GNG13Q9P2W3 67 aa19.16■□□□□ 0.66
VPS53-211ENST00000571805 MMP24Q9Y5R2 645 aa19.16■□□□□ 0.66
VPS53-211ENST00000571805 ATXN7O15265 892 aaPredicted RBP19.15■□□□□ 0.66
VPS53-211ENST00000571805 MLNRO43193 412 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 Q6ZT83 130 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 FAM214BQ7L5A3 538 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 SSX7Q7RTT5 188 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 SLC35E3Q7Z769 313 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 ZNF645Q8N7E2 425 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 C5orf30Q96GV9 206 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 NIPSNAP3BQ9BS92 247 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 TMEM30CPA0ZSE6 113 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 RNF212BA8MTL3 300 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 C12orf77C9JDV5 145 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 FAM90A26D6RGX4 464 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 WNT9BO14905 357 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 S100A12P80511 92 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 EIF4EBP1Q13541 118 aaPredicted RBP19.15■□□□□ 0.66
VPS53-211ENST00000571805 GUSBP1Q15486 140 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 FAM53AQ6NSI3 398 aaPredicted RBP19.15■□□□□ 0.66
VPS53-211ENST00000571805 OR4C12Q96R67 309 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 PARD6GQ9BYG4 376 aaPredicted RBP19.15■□□□□ 0.66
VPS53-211ENST00000571805 KCNIP1Q9NZI2 227 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 RNF150Q9ULK6 438 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 PRRC2CQ9Y520 2896 aaKnown RBP19.15■□□□□ 0.66
VPS53-211ENST00000571805 PCNX2A6NKB5 2137 aa19.15■□□□□ 0.66
VPS53-211ENST00000571805 WISP2O76076 250 aa19.14■□□□□ 0.66
VPS53-211ENST00000571805 IFNA17P01571 189 aa19.14■□□□□ 0.66
VPS53-211ENST00000571805 SMIM6P0DI80 62 aa19.14■□□□□ 0.66
VPS53-211ENST00000571805 NQO2P16083 231 aa19.14■□□□□ 0.66
VPS53-211ENST00000571805 OR3A1P47881 315 aa19.14■□□□□ 0.66
VPS53-211ENST00000571805 SERF2P84101 59 aa19.14■□□□□ 0.66
VPS53-211ENST00000571805 SPANXN5Q5MJ07 72 aa19.14■□□□□ 0.66
VPS53-211ENST00000571805 ZNF826PQ6ZT77 177 aa19.14■□□□□ 0.66
VPS53-211ENST00000571805 WDR61Q9GZS3 305 aaKnown RBP19.14■□□□□ 0.66
VPS53-211ENST00000571805 OBP2BQ9NPH6 170 aa19.14■□□□□ 0.66
VPS53-211ENST00000571805 CISD1Q9NZ45 108 aaKnown RBP19.14■□□□□ 0.66
VPS53-211ENST00000571805 RAMP3O60896 148 aa19.14■□□□□ 0.65
VPS53-211ENST00000571805 IGHG3P01860 377 aa19.14■□□□□ 0.65
VPS53-211ENST00000571805 HOXA4Q00056 320 aaPredicted RBP19.14■□□□□ 0.65
VPS53-211ENST00000571805 ELOBQ15370 118 aa19.14■□□□□ 0.65
VPS53-211ENST00000571805 ACSF3Q4G176 576 aaPredicted RBP19.14■□□□□ 0.65
VPS53-211ENST00000571805 GALMQ96C23 342 aa19.14■□□□□ 0.65
VPS53-211ENST00000571805 ZNF665Q9H7R5 613 aa19.14■□□□□ 0.65
VPS53-211ENST00000571805 AP4M1O00189 453 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms