RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 RAB7AP51149 207 aa16.67■□□□□ 0.26
VPS53-210ENST00000571456 MRPS10P82664 201 aaKnown RBP16.67■□□□□ 0.26
VPS53-210ENST00000571456 MADCAM1Q13477 382 aa16.67■□□□□ 0.26
VPS53-210ENST00000571456 TREML4Q6UXN2 200 aa16.67■□□□□ 0.26
VPS53-210ENST00000571456 SLC25A48Q6ZT89 311 aaKnown RBP16.67■□□□□ 0.26
VPS53-210ENST00000571456 SIGLECL1Q8N7X8 197 aa16.67■□□□□ 0.26
VPS53-210ENST00000571456 OR10X1Q8NGY0 326 aa16.67■□□□□ 0.26
VPS53-210ENST00000571456 OR5R1Q8NH85 324 aa16.67■□□□□ 0.26
VPS53-210ENST00000571456 IL1F10Q8WWZ1 152 aa16.67■□□□□ 0.26
VPS53-210ENST00000571456 EXTL2Q9UBQ6 330 aa16.67■□□□□ 0.26
VPS53-210ENST00000571456 WNK1Q9H4A3 2382 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 A0A1W2PRD5 423 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 A0A1W2PRF3 423 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 A0A1W2PRM7 423 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 BTBD17A6NE02 478 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 TXNL1O43396 289 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 HLA-DQB1P01920 261 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 DYNLT3P51808 116 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 PRB3Q04118 309 aaPredicted RBP16.66■□□□□ 0.26
VPS53-210ENST00000571456 CNIH2Q6PI25 160 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 SHISA2Q6UWI4 295 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 HOGA1Q86XE5 327 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 ZNF439Q8NDP4 499 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 OR2AK2Q8NG84 335 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 CYYR1Q96J86 154 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 DCUN1D5Q9BTE7 237 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 ZNF747Q9BV97 191 aa16.66■□□□□ 0.26
VPS53-210ENST00000571456 CTDSP2O14595 271 aa16.65■□□□□ 0.26
VPS53-210ENST00000571456 SSX5O60225 188 aa16.65■□□□□ 0.26
VPS53-210ENST00000571456 SCTP09683 121 aa16.65■□□□□ 0.26
VPS53-210ENST00000571456 S100A5P33763 92 aa16.65■□□□□ 0.26
VPS53-210ENST00000571456 ZNF137PP52743 207 aa16.65■□□□□ 0.26
VPS53-210ENST00000571456 BAMBIQ13145 260 aa16.65■□□□□ 0.26
VPS53-210ENST00000571456 OR10J5Q8NHC4 309 aa16.65■□□□□ 0.26
VPS53-210ENST00000571456 ZNF48Q96MX3 618 aaPredicted RBP16.65■□□□□ 0.26
VPS53-210ENST00000571456 ABHD14AQ9BUJ0 271 aa16.65■□□□□ 0.26
VPS53-210ENST00000571456 ST6GALNAC5Q9BVH7 336 aa16.65■□□□□ 0.26
VPS53-210ENST00000571456 IFT46Q9NQC8 304 aa16.65■□□□□ 0.26
VPS53-210ENST00000571456 ANXA10Q9UJ72 324 aa16.65■□□□□ 0.26
VPS53-210ENST00000571456 ELF5Q9UKW6 265 aaPredicted RBP16.65■□□□□ 0.26
VPS53-210ENST00000571456 MRPS7Q9Y2R9 242 aaKnown RBP16.65■□□□□ 0.26
VPS53-210ENST00000571456 TRBV6-7A0A0A0MS04 114 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 IGHV3-43A0A0B4J1X8 118 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 FAM172BPA6NC97 362 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 LY6LH3BQJ8 138 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 IGHV3-43DP0DP04 118 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 BRS3P32247 399 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 IER3P46695 156 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 GNG10P50151 68 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 RPL15P61313 204 aaKnown RBP16.64■□□□□ 0.25
VPS53-210ENST00000571456 LRRC75BQ2VPJ9 315 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 LAX1Q8IWV1 398 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 IZUMO1Q8IYV9 350 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 OR8H3Q8N146 312 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 BEST4Q8NFU0 473 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 OR52L2PQ8NGH6 319 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 UBALD1Q8TB05 177 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 RPEQ96AT9 228 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 DIRAS2Q96HU8 199 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 AJUBAQ96IF1 538 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 MIXL1Q9H2W2 232 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 SLC23A1Q9UHI7 598 aa16.64■□□□□ 0.25
VPS53-210ENST00000571456 ZNF230Q9UIE0 474 aaPredicted RBP16.64■□□□□ 0.25
VPS53-210ENST00000571456 GSTT2P0CG29 244 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 GSTT2BP0CG30 244 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 CEACAM6P40199 344 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 SSX2Q16385 188 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 TPTE2P1Q5T6R2 138 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 PYHIN1Q6K0P9 492 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 FAM71F2Q6NXP2 309 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 LHFPL4Q7Z7J7 247 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 OR10V1Q8NGI7 309 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 GPX8Q8TED1 209 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 GINS4Q9BRT9 223 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 ABCB10Q9NRK6 738 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 PIPOXQ9P0Z9 390 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 ANAPC10Q9UM13 185 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 CMYA5Q8N3K9 4069 aa16.63■□□□□ 0.25
VPS53-210ENST00000571456 A6NHS1 94 aa16.62■□□□□ 0.25
VPS53-210ENST00000571456 GAPDHP04406 335 aaKnown RBP16.62■□□□□ 0.25
VPS53-210ENST00000571456 PPP1CCP36873 323 aaKnown RBP16.62■□□□□ 0.25
VPS53-210ENST00000571456 ARPC4P59998 168 aa16.62■□□□□ 0.25
VPS53-210ENST00000571456 ACTBP60709 375 aa16.62■□□□□ 0.25
VPS53-210ENST00000571456 SSBP1Q04837 148 aaKnown RBP16.62■□□□□ 0.25
VPS53-210ENST00000571456 ZNF816Q0VGE8 651 aaPredicted RBP16.62■□□□□ 0.25
VPS53-210ENST00000571456 CT45A1Q5HYN5 189 aa16.62■□□□□ 0.25
VPS53-210ENST00000571456 LIAT1Q6ZQX7 453 aa16.62■□□□□ 0.25
VPS53-210ENST00000571456 CT45A3Q8NHU0 189 aa16.62■□□□□ 0.25
VPS53-210ENST00000571456 LEAP2Q969E1 77 aa16.62■□□□□ 0.25
VPS53-210ENST00000571456 TOMM40LQ969M1 308 aa16.62■□□□□ 0.25
VPS53-210ENST00000571456 CTDSPLO15194 276 aa16.61■□□□□ 0.25
VPS53-210ENST00000571456 NAT1P18440 290 aa16.61■□□□□ 0.25
VPS53-210ENST00000571456 PTBP1P26599 531 aaKnown RBP eCLIP16.61■□□□□ 0.25
VPS53-210ENST00000571456 TAS2R46P59540 309 aa16.61■□□□□ 0.25
VPS53-210ENST00000571456 HERPUD1Q15011 391 aa16.61■□□□□ 0.25
VPS53-210ENST00000571456 SSX3Q99909 188 aa16.61■□□□□ 0.25
VPS53-210ENST00000571456 NECAP2Q9NVZ3 263 aa16.61■□□□□ 0.25
VPS53-210ENST00000571456 PITPNC1Q9UKF7 332 aa16.61■□□□□ 0.25
VPS53-210ENST00000571456 IGKV1-6A0A0C4DH72 117 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 DNAJC9-AS1A6NH13 148 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms