RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 OR10AC1Q8NH08 325 aa13.43□□□□□ -0.26
CLK3-227ENST00000570296 USMG5Q96IX5 58 aa13.43□□□□□ -0.26
CLK3-227ENST00000570296 ZNF556Q9HAH1 456 aa13.43□□□□□ -0.26
CLK3-227ENST00000570296 ARL8BQ9NVJ2 186 aa13.43□□□□□ -0.26
CLK3-227ENST00000570296 ZNF581Q9P0T4 197 aa13.43□□□□□ -0.26
CLK3-227ENST00000570296 AIPO00170 330 aa13.42□□□□□ -0.26
CLK3-227ENST00000570296 OR7C1O76099 320 aaPredicted RBP13.42□□□□□ -0.26
CLK3-227ENST00000570296 CALB2P22676 271 aa13.42□□□□□ -0.26
CLK3-227ENST00000570296 ALKBH1Q13686 389 aaKnown RBP13.42□□□□□ -0.26
CLK3-227ENST00000570296 FAM131AQ6UXB0 335 aa13.42□□□□□ -0.26
CLK3-227ENST00000570296 MAPKAPK5-AS1Q8N8E1 139 aa13.42□□□□□ -0.26
CLK3-227ENST00000570296 OR5T1Q8NG75 326 aa13.42□□□□□ -0.26
CLK3-227ENST00000570296 OR52B4Q8NGK2 314 aa13.42□□□□□ -0.26
CLK3-227ENST00000570296 TBX5Q99593 518 aa13.42□□□□□ -0.26
CLK3-227ENST00000570296 MBNL3Q9NUK0 354 aaKnown RBP13.42□□□□□ -0.26
CLK3-227ENST00000570296 RCC2Q9P258 522 aaKnown RBP13.42□□□□□ -0.26
CLK3-227ENST00000570296 FBXL7Q9UJT9 491 aa13.42□□□□□ -0.26
CLK3-227ENST00000570296 APLNQ9ULZ1 77 aa13.42□□□□□ -0.26
CLK3-227ENST00000570296 APOBP04114 4563 aaKnown RBP13.42□□□□□ -0.26
CLK3-227ENST00000570296 UBR4Q5T4S7 5183 aa13.42□□□□□ -0.26
CLK3-227ENST00000570296 LRP1BQ9NZR2 4599 aa13.41□□□□□ -0.26
CLK3-227ENST00000570296 A0A1W2PQL4 384 aaPredicted RBP13.41□□□□□ -0.26
CLK3-227ENST00000570296 CDK2AP2O75956 126 aa13.41□□□□□ -0.26
CLK3-227ENST00000570296 CA2P00918 260 aa13.41□□□□□ -0.26
CLK3-227ENST00000570296 HBZP02008 142 aa13.41□□□□□ -0.26
CLK3-227ENST00000570296 MORN2Q502X0 79 aa13.41□□□□□ -0.26
CLK3-227ENST00000570296 NHLRC3Q5JS37 347 aa13.41□□□□□ -0.26
CLK3-227ENST00000570296 C6orf183Q5T699 404 aa13.41□□□□□ -0.26
CLK3-227ENST00000570296 CYP2R1Q6VVX0 501 aa13.41□□□□□ -0.26
CLK3-227ENST00000570296 CLCC1Q96S66 551 aa13.41□□□□□ -0.26
CLK3-227ENST00000570296 TINAGL1Q9GZM7 467 aaPredicted RBP13.41□□□□□ -0.26
CLK3-227ENST00000570296 H2AFY2Q9P0M6 372 aaPredicted RBP13.41□□□□□ -0.26
CLK3-227ENST00000570296 SLC22A1O15245 554 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 PRKYO43930 277 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 RBBP9O75884 186 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 FADS2O95864 444 aaKnown RBP13.4□□□□□ -0.26
CLK3-227ENST00000570296 OR2T7P0C7T2 308 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 FOLR2P14207 255 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 NANOS2P60321 138 aaKnown RBP13.4□□□□□ -0.26
CLK3-227ENST00000570296 TRIM25Q14258 630 aaKnown RBP13.4□□□□□ -0.26
CLK3-227ENST00000570296 RSU1Q15404 277 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 ANKRD55Q3KP44 614 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 NXNL2Q5VZ03 156 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 BCDIN3DQ7Z5W3 292 aaKnown RBP13.4□□□□□ -0.26
CLK3-227ENST00000570296 STX19Q8N4C7 294 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 OR13C3Q8NGS6 347 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 OR2G2Q8NGZ5 317 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 OR1L1Q8NH94 360 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 GRPEL2Q8TAA5 225 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 C11orf45Q8TAV5 145 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 GHSRQ92847 366 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 CPNE2Q96FN4 548 aaPredicted RBP13.4□□□□□ -0.26
CLK3-227ENST00000570296 OR2S2Q9NQN1 319 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 METTL1Q9UBP6 276 aaKnown RBP13.4□□□□□ -0.26
CLK3-227ENST00000570296 FBXL17Q9UF56 701 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 ST3GAL6Q9Y274 331 aa13.4□□□□□ -0.26
CLK3-227ENST00000570296 C2orf70A6NJV1 201 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 B2RBV5 119 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 BMPR1BO00238 502 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 ATP6V1B2P21281 511 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 OR3A3P47888 321 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 AADACL4Q5VUY2 407 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 FAM71F2Q6NXP2 309 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 TRAT1Q6PIZ9 186 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 FAM220AQ7Z4H9 259 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 KCTD20Q7Z5Y7 419 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 LINC00596Q86U02 117 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 PRR18Q8N4B5 295 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 NEK7Q8TDX7 302 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 FBLIM1Q8WUP2 373 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 MRPS24Q96EL2 167 aaKnown RBP13.39□□□□□ -0.27
CLK3-227ENST00000570296 TMEM68Q96MH6 324 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 RNF5Q99942 180 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 TRAPPC2LQ9UL33 140 aa13.39□□□□□ -0.27
CLK3-227ENST00000570296 SAA2-SAA4A0A096LPE2 208 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 KIR2DL5BA0A0G2JN68 375 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 KIR2DL5BA0A0G2JPC4 375 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 TCRBV5S2A0A599 114 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 OR5H14A6NHG9 310 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 SULT1B1O43704 296 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 GSTP1P09211 210 aaKnown RBP13.38□□□□□ -0.27
CLK3-227ENST00000570296 SAA2P0DJI9 122 aaPredicted RBP13.38□□□□□ -0.27
CLK3-227ENST00000570296 CTRB1P17538 263 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 RBM11P57052 281 aaKnown RBP13.38□□□□□ -0.27
CLK3-227ENST00000570296 DEFA5Q01523 94 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 FXYD3Q14802 87 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 SPATS1Q496A3 300 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 TMEM177Q53S58 311 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 SYT6Q5T7P8 510 aaPredicted RBP13.38□□□□□ -0.27
CLK3-227ENST00000570296 CTRB2Q6GPI1 263 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 TMEM61Q8N0U2 210 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 KIR2DL5AQ8N109 375 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 STPG3Q8N7X2 389 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 OR51A4Q8NGJ6 313 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 OR10K1Q8NGX5 313 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 KIR2DL5BQ8NHK3 375 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 TNFAIP8L1Q8WVP5 186 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 PRRG3Q9BZD7 231 aa13.38□□□□□ -0.27
CLK3-227ENST00000570296 PARP12Q9H0J9 701 aaKnown RBP13.38□□□□□ -0.27
CLK3-227ENST00000570296 GNG8Q9UK08 70 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms