RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 OR4C46A6NHA9 309 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 METTL15A6NJ78 407 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 RFPL4AA6NLU0 287 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 TRIM49D1C9J1S8 452 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 RFPL4AL1F8VTS6 287 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 KRTAP4-16G5E9R7 235 aaPredicted RBP2.27□□□□□ -2.05
VPS35-209ENST00000568642 K7EQS6 105 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 M0QZK8 103 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 PHYHO14832 338 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 FFAR1O14842 300 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 MGRN1O60291 552 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 PROP1O75360 226 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 ZFAND5O76080 213 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 NUDT14O95848 222 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 C1QBP02746 253 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 KLK3P07288 261 aaPredicted RBP2.27□□□□□ -2.05
VPS35-209ENST00000568642 CD48P09326 243 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 OR5H8P0DN80 308 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 GPX2P18283 190 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 GGT1P19440 569 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 IGHV1-2P23083 117 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 CXCR1P25024 350 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 MARK3P27448 753 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 MIPP30301 263 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 IL2RGP31785 369 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 CCR7P32248 378 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 RPA3P35244 121 aaPredicted RBP2.27□□□□□ -2.05
VPS35-209ENST00000568642 SERPINB5P36952 375 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 SLCO1A2P46721 670 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 SULT1A1P50225 295 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 SULT1A2P50226 295 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 NDUFA8P51970 172 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 RAP1BP61224 184 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 DYNLL1P63167 89 aaKnown RBP2.27□□□□□ -2.05
VPS35-209ENST00000568642 CDK5Q00535 292 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 FZD2Q14332 565 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 EDDM3AQ14507 147 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 TMEM78Q5T7P6 136 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 OR10K2Q6IF99 312 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 UNQ9370/PRO34162Q6UXP9 181 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 ZNF788Q6ZQV5 615 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 NOTCH2NLQ7Z3S9 236 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 COMMD7Q86VX2 200 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 CATSPER3Q86XQ3 398 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 MUC15Q8N387 334 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 C4orf32Q8N8J7 132 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 WDSUB1Q8N9V3 476 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 OR10G7Q8NGN6 311 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 OR2T4Q8NH00 348 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 OR51Q1Q8NH59 317 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 OR10A6Q8NH74 314 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 OR51E1Q8TCB6 317 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 ZFP90Q8TF47 636 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 PYURFQ96I23 114 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 C18orf15Q96N68 181 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 OR52B2Q96RD2 323 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 TBX5Q99593 518 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 SIGMAR1Q99720 223 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 EMC6Q9BV81 110 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 SAMD10Q9BYL1 202 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 SLC25A39Q9BZJ4 359 aaPredicted RBP2.27□□□□□ -2.05
VPS35-209ENST00000568642 DEFB127Q9H1M4 99 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 KCNJ16Q9NPI9 418 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 MIEF1Q9NQG6 463 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 PARVAQ9NVD7 372 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 ASF1BQ9NVP2 202 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 FAM206AQ9NX38 181 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 SS18L2Q9UHA2 77 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 PSG8Q9UQ74 426 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 DOCK10Q96BY6 2186 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 HERC1Q15751 4861 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 DMBT1Q9UGM3 2413 aaPredicted RBP2.27□□□□□ -2.05
VPS35-209ENST00000568642 ANK3Q12955 4377 aaKnown RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 MPDZO75970 2070 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 CR1P17927 2039 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 IGKV1-27A0A075B6S5 117 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 IGHV3OR16-9A0A0B4J2B5 98 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 TEX48A0A1B0GUV7 120 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 RBFOX3A6NFN3 312 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 K7EP13 123 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 FAAHO00519 579 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 TCAPO15273 167 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 EIF1BO60739 113 aaKnown RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 GALR3O60755 368 aaPredicted RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 TOMM40O96008 361 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 IGLV2-14P01704 120 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 IGHG2P01859 326 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 EDN1P05305 212 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 EIF4EP06730 217 aaKnown RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 GKN3PP0CG01 181 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 LAMP1P11279 417 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 WARSP23381 471 aaKnown RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 F8A1P23610 371 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 AK4P27144 223 aaPredicted RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 EIF1P41567 113 aaKnown RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 OR3A4PP47883 348 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 LGALS7P47929 136 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 ZNF138P52744 262 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 ZNF45Q02386 682 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 REG3AQ06141 175 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms