RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 TAF9BQ9HBM6 251 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 MBNL3Q9NUK0 354 aaKnown RBP11.63□□□□□ -0.55
CLN3-236ENST00000568558 SCN3BQ9NY72 215 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 ERGIC3Q9Y282 383 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 RRP15Q9Y3B9 282 aaKnown RBP11.63□□□□□ -0.55
CLN3-236ENST00000568558 MGMTP16455 207 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 CRHBPP24387 322 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 TAS2R43P59537 309 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 KIAA0141Q14154 515 aaPredicted RBP11.62□□□□□ -0.55
CLN3-236ENST00000568558 INSL4Q14641 139 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 GNMTQ14749 295 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 MORN2Q502X0 79 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 ASPHD1Q5U4P2 390 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 SIGIRRQ6IA17 410 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 LYPD6Q86Y78 171 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 CDH26Q8IXH8 852 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 ODF3L1Q8IXM7 274 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 ZNF491Q8N8L2 437 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 UBE2E2Q96LR5 201 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 Q96M66 194 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 ABHD14AQ9BUJ0 271 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 MND1Q9BWT6 205 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 KLK15Q9H2R5 256 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 BANF2Q9H503 90 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 GNB4Q9HAV0 340 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 OR2S2Q9NQN1 319 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 RAB26Q9ULW5 256 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 ZNF256Q9Y2P7 627 aaPredicted RBP11.62□□□□□ -0.55
CLN3-236ENST00000568558 TPRKBQ9Y3C4 175 aa11.62□□□□□ -0.55
CLN3-236ENST00000568558 SACSQ9NZJ4 4579 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 UBE2QL1A1L167 161 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 G3V318 75 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 I3L521 148 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 ATP6V0E1O15342 81 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 CRTAPO75718 401 aaPredicted RBP11.61□□□□□ -0.55
CLN3-236ENST00000568558 IGLV1-40P01703 118 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 HLA-DRB1P01911 266 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 MAS1P04201 325 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 GLAP06280 429 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 FUT3P21217 361 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 CNTFRP26992 372 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 ACTBP60709 375 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 RUNX1Q01196 453 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 C5orf24Q7Z6I8 188 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 ZNF554Q86TJ5 538 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 OR52L2PQ8NGH6 319 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 ASCL2Q99929 193 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 NABP2Q9BQ15 211 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 MRPL20Q9BYC9 149 aaKnown RBP11.61□□□□□ -0.55
CLN3-236ENST00000568558 OR51J1Q9H342 316 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 JPT1Q9UK76 154 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 WSB1Q9Y6I7 421 aa11.61□□□□□ -0.55
CLN3-236ENST00000568558 RGS10O43665 173 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 OR8U8P0C7N1 319 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 CHATP28329 748 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 PPP1CCP36873 323 aaKnown RBP11.6□□□□□ -0.55
CLN3-236ENST00000568558 MAP2K4P45985 399 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 INSL3P51460 131 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 ZNF616Q08AN1 781 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 SPHARQ15513 63 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 TMEM65Q6PI78 240 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 OR1N2Q8NGR9 330 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 MRPL30Q8TCC3 161 aaKnown RBP11.6□□□□□ -0.55
CLN3-236ENST00000568558 RITA1Q96K30 269 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 DERL3Q96Q80 235 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 PARP11Q9NR21 331 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 KCNIP1Q9NZI2 227 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 VSIG4Q9Y279 399 aa11.6□□□□□ -0.55
CLN3-236ENST00000568558 IGHV7-81A0A0B4J1V7 117 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 TRAV41A0A0B4J266 112 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 NBR2O15453 112 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 YPEL1O60688 119 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 PDCD6O75340 191 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 CD1AP06126 327 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 GNB1P62873 340 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 HTD2P86397 168 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 MED22Q15528 200 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 C5orf64Q2M2E5 130 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 LY6G6FQ5SQ64 297 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 FAM27D1Q5T7N8 215 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 ZNF833PQ6ZTB9 187 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 YPEL2Q96QA6 119 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 OR5B12Q96R08 314 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 ZNF251Q9BRH9 671 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 CCDC90BQ9GZT6 254 aa11.59□□□□□ -0.55
CLN3-236ENST00000568558 SAA2-SAA4A0A096LPE2 208 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 C3orf84H3BNL1 204 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 NDUFA3O95167 84 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 LY86O95711 162 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 SAA2P0DJI9 122 aaPredicted RBP11.58□□□□□ -0.56
CLN3-236ENST00000568558 BLVRBP30043 206 aaPredicted RBP11.58□□□□□ -0.56
CLN3-236ENST00000568558 OR3A3P47888 321 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 RAB9AP51151 201 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 RBM48Q5RL73 367 aaKnown RBP11.58□□□□□ -0.56
CLN3-236ENST00000568558 PRSS48Q7RTY5 328 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 NKAIN3Q8N8D7 197 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 NPBQ8NG41 125 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 FAM46BQ96A09 425 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 UQCC2Q9BRT2 126 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 TMED9Q9BVK6 235 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms