RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CHST1O43916 411 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 FCER2P06734 321 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 DTYMKP23919 212 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 GNG2P59768 71 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 RELBQ01201 579 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 ARL6IP1Q15041 203 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 TMEM219Q86XT9 240 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 ODF3L1Q8IXM7 274 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 GVQW1Q8N7I0 195 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 TOMM40LQ969M1 308 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 MGAT4AQ9UM21 535 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 AMMECR1Q9Y4X0 333 aaPredicted RBP15.71■□□□□ 0.11
CLN3-225ENST00000566824 MEIS3P1A6NDR6 274 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 A6NDX4 124 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 CTDSP2O14595 271 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 ST8SIA5O15466 376 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 APOA1P02647 267 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 CEACAM3P40198 252 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 CEACAM6P40199 344 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 DYNLT3P51808 116 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 Q3ZCU0 254 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 STEAP3Q658P3 488 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 Q6ZS49 121 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 OR4A4PQ8NGN8 299 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 OR5R1Q8NH85 324 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 CFHR4Q92496 578 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 RPEQ96AT9 228 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 CABLES2Q9BTV7 478 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 ABHD14AQ9BUJ0 271 aa15.7■□□□□ 0.1
CLN3-225ENST00000566824 CCDC160A6NGH7 325 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 HSD17B6O14756 317 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 TIMM23O14925 209 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 BET1O15155 118 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 NOL3O60936 208 aaKnown RBP15.69■□□□□ 0.1
CLN3-225ENST00000566824 HLA-DQB1P01920 261 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 OR3A3P47888 321 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 LY6G6FQ5SQ64 297 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 TMEM69Q5SWH9 247 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 LYG1Q8N1E2 194 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 DRAM1Q8N682 238 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 CREB3L1Q96BA8 519 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 C11orf54Q9H0W9 315 aaPredicted RBP15.69■□□□□ 0.1
CLN3-225ENST00000566824 IFI27L2Q9H2X8 130 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 C1RLQ9NZP8 487 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 CCDC59Q9P031 241 aaKnown RBP15.69■□□□□ 0.1
CLN3-225ENST00000566824 TCF19Q9Y242 345 aa15.69■□□□□ 0.1
CLN3-225ENST00000566824 TRBV6-7A0A0A0MS04 114 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 BTBD17A6NE02 478 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 ACTG1P63261 375 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 SRSF7Q16629 238 aaKnown RBP eCLIP15.68■□□□□ 0.1
CLN3-225ENST00000566824 MZT2AQ6P582 158 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 RTN4IP1Q8WWV3 396 aaPredicted RBP15.68■□□□□ 0.1
CLN3-225ENST00000566824 AP3S1Q92572 193 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 CMTM3Q96MX0 182 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 SLIRPQ9GZT3 109 aaKnown RBP15.68■□□□□ 0.1
CLN3-225ENST00000566824 ABCB10Q9NRK6 738 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 IGHV3-72A0A0B4J1Y9 119 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 IGHV1-3A0A0C4DH29 117 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 OOSP1A8MZH6 123 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 ZNF736B4DX44 427 aaPredicted RBP15.68■□□□□ 0.1
CLN3-225ENST00000566824 HSPA12AO43301 675 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 HKR1P10072 659 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 ZBTB25P24278 435 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 KIR2DS4P43632 304 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 ZNF137PP52743 207 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 PITPNAQ00169 270 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 ZNF816Q0VGE8 651 aaPredicted RBP15.68■□□□□ 0.1
CLN3-225ENST00000566824 KIR2DS1Q14954 304 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 LAX1Q8IWV1 398 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 OR2AK2Q8NG84 335 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 OR56B4Q8NH76 319 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 ABHD14BQ96IU4 210 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 AGMATQ9BSE5 352 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 RDH8Q9NYR8 311 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 RNF150Q9ULK6 438 aa15.68■□□□□ 0.1
CLN3-225ENST00000566824 MRPS7Q9Y2R9 242 aaKnown RBP15.68■□□□□ 0.1
CLN3-225ENST00000566824 TMEM89A2RUT3 159 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 FAM25AB3EWG3 89 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 FAM25CB3EWG5 89 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 FAM25GB3EWG6 89 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 RGS11O94810 467 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 GAPDHP04406 335 aaKnown RBP15.67■□□□□ 0.1
CLN3-225ENST00000566824 SOX6P35712 828 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 MNDAP41218 407 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 RAB7AP51149 207 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 RPL39P5Q59GN2 51 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 FOXB2Q5VYV0 432 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 HOGA1Q86XE5 327 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 SNAPC3Q92966 411 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 ZNF251Q9BRH9 671 aa15.67■□□□□ 0.1
CLN3-225ENST00000566824 RSL24D1Q9UHA3 163 aaKnown RBP15.67■□□□□ 0.1
CLN3-225ENST00000566824 SAA2-SAA4A0A096LPE2 208 aa15.66■□□□□ 0.1
CLN3-225ENST00000566824 FAM90A9PA6NNJ1 464 aa15.66■□□□□ 0.1
CLN3-225ENST00000566824 PROP1O75360 226 aa15.66■□□□□ 0.1
CLN3-225ENST00000566824 SNRNP70P08621 437 aaKnown RBP15.66■□□□□ 0.1
CLN3-225ENST00000566824 SAA2P0DJI9 122 aaPredicted RBP15.66■□□□□ 0.1
CLN3-225ENST00000566824 MOB3BQ86TA1 216 aa15.66■□□□□ 0.1
CLN3-225ENST00000566824 SNX29P2Q8IUI4 249 aa15.66■□□□□ 0.1
CLN3-225ENST00000566824 CAPSLQ8WWF8 208 aa15.66■□□□□ 0.1
CLN3-225ENST00000566824 DCUN1D5Q9BTE7 237 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms