RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 WNT5AP41221 380 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 MAGEA5P43359 124 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 KIR2DS4P43632 304 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 ICAM4Q14773 271 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 KIR2DS1Q14954 304 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 OR8G1Q15617 311 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 NCMAPQ5T1S8 102 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 ABLIM2Q6H8Q1 611 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 SPNS3Q6ZMD2 512 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 MRPL52Q86TS9 123 aaKnown RBP11.29□□□□□ -0.6
VPS4A-204ENST00000566354 ODF3L1Q8IXM7 274 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 CMTM1Q8IZ96 169 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 IL22RA2Q969J5 263 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 SIRT7Q9NRC8 400 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 WSB1Q9Y6I7 421 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 DSPP15924 2871 aaKnown RBP11.29□□□□□ -0.6
VPS4A-204ENST00000566354 CHST1O43916 411 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 LY86O95711 162 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 SCTP09683 121 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 CDX1P47902 265 aaPredicted RBP11.29□□□□□ -0.6
VPS4A-204ENST00000566354 FGF12P61328 243 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 DLK1P80370 383 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 PLGLB1Q02325 96 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 IL24Q13007 206 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 COLCA1Q6ZS62 124 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 TMEM251Q8N6I4 163 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 TMEM217Q8N7C4 229 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 OR5D13Q8NGL4 314 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 OR10D3Q8NH80 312 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 PLPPR1Q8TBJ4 325 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 TVP23CQ96ET8 276 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 NIPSNAP3BQ9BS92 247 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 IGKV1D-13A0A0B4J2D9 117 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 PIGBOS1A0A0B4J2F0 54 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 A0A1W2PPQ1 181 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 ZNF727A8MUV8 499 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 KLRC4-KLRK1H3BQV0 150 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 IGKV1-13P0DP09 117 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 BCL3P20749 454 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 CEBPGP53567 150 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 TAS2R30P59541 319 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 ELOBQ15370 118 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 NRN1LQ496H8 165 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 KHDC3LQ587J8 217 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 SLC35E3Q7Z769 313 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 BATF2Q8N1L9 274 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 CYB561D1Q8N8Q1 229 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 OR2V1Q8NHB1 315 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 CLDND2Q8NHS1 167 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 ADGRG7Q96K78 797 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 ATP5SQ99766 215 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 MMP24Q9Y5R2 645 aa11.28□□□□□ -0.6
VPS4A-204ENST00000566354 H0Y980 276 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 H0YL77 283 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 DFFBO76075 338 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 EPHA1P21709 976 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 PMP22Q01453 160 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 HERPUD1Q15011 391 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 MPV17LQ2QL34 196 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 ZNF383Q8NA42 475 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 CPEB3Q8NE35 698 aaKnown RBP11.27□□□□□ -0.6
VPS4A-204ENST00000566354 OR10G4Q8NGN3 311 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 CA5BP1Q8WTZ4 195 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 B4GALT7Q9UBV7 327 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 RNF115Q9Y4L5 304 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 ATP23Q9Y6H3 246 aa11.27□□□□□ -0.6
VPS4A-204ENST00000566354 A0A087X0M5 115 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 TRAV1-1A0A0B4J248 108 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 A0A1B0GX30 115 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 DLEU1O43261 78 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 GFRA1P56159 465 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 RPL23AP62750 156 aaKnown RBP11.27□□□□□ -0.61
VPS4A-204ENST00000566354 RUNX1Q01196 453 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 RNFT1Q5M7Z0 435 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 TMEM178AQ8NBL3 297 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 Q8WTZ3 238 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 MISP3Q96FF7 219 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 NOL4LQ96MY1 436 aaPredicted RBP11.27□□□□□ -0.61
VPS4A-204ENST00000566354 CCL28Q9NRJ3 127 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 DKK4Q9UBT3 224 aa11.27□□□□□ -0.61
VPS4A-204ENST00000566354 MRPS18CQ9Y3D5 142 aaKnown RBP11.27□□□□□ -0.61
VPS4A-204ENST00000566354 B4DEV8 164 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 CYTIPO60759 359 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 YIF1AO95070 293 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 S100GP29377 79 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 GLIPR1P48060 266 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 PAX9P55771 341 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 ZNF154Q13106 437 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 PRDX4Q13162 271 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 CEACAM21Q3KPI0 293 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 ZNF610Q8N9Z0 462 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 GPHA2Q96T91 129 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 PRDM13Q9H4Q3 707 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 RAXQ9Y2V3 346 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 SVILO95425 2214 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 K7EM74 188 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 PGLYRP1O75594 196 aaPredicted RBP11.26□□□□□ -0.61
VPS4A-204ENST00000566354 CNOT4O95628 575 aaKnown RBP11.26□□□□□ -0.61
VPS4A-204ENST00000566354 SLC25A6P12236 298 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 S100A2P29034 98 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms