RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 PLSCR3Q9NRY6 295 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 SPATA2Q9UM82 520 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 ETV7Q9Y603 341 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 A0A075B6Q4 140 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 SAA2-SAA4A0A096LPE2 208 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 IGHV3-72A0A0B4J1Y9 119 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 CLPSL1A2RUU4 121 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 ST8SIA5O15466 376 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 EIF4EP06730 217 aaKnown RBP7.84□□□□□ -1.15
CLN3-220ENST00000566040 SNRNP70P08621 437 aaKnown RBP7.84□□□□□ -1.15
CLN3-220ENST00000566040 GSTT2P0CG29 244 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 GSTT2BP0CG30 244 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 SAA2P0DJI9 122 aaPredicted RBP7.84□□□□□ -1.15
CLN3-220ENST00000566040 PRRX1P54821 245 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 SCAND1P57086 179 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 LINC00205P59089 165 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 FOXL1Q12952 345 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 MADCAM1Q13477 382 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 TIMM50Q3ZCQ8 353 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 GPR107Q5VW38 600 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 DHRS7BQ6IAN0 325 aaPredicted RBP7.84□□□□□ -1.15
CLN3-220ENST00000566040 ZNF833PQ6ZTB9 187 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 IZUMO1Q8IYV9 350 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 TOMM40LQ969M1 308 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 RITA1Q96K30 269 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 CITED1Q99966 193 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 CMSS1Q9BQ75 279 aaKnown RBP7.84□□□□□ -1.15
CLN3-220ENST00000566040 ABHD14AQ9BUJ0 271 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 MRPL20Q9BYC9 149 aaKnown RBP7.84□□□□□ -1.15
CLN3-220ENST00000566040 ATG5Q9H1Y0 275 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 ABCG5Q9H222 651 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 OR2S2Q9NQN1 319 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 GNG12Q9UBI6 72 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 ANAPC10Q9UM13 185 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 NOTCH1P46531 2555 aa7.84□□□□□ -1.15
CLN3-220ENST00000566040 TRBV6-7A0A0A0MS04 114 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 POM121CA8CG34 1229 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 ADARB2-AS1A8MUL3 147 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 SERPINE3A8MV23 424 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 TRDCB7Z8K6 153 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 H3BUI4 141 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 TOR1AO14656 332 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 ITGB1BP1O14713 200 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 LANCL1O43813 399 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 OR2F2O95006 317 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 KIR2DS4P43632 304 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 SERPINB10P48595 397 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 LSAMPQ13449 338 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 CDNFQ49AH0 187 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 RPL39P5Q59GN2 51 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 HACD4Q5VWC8 232 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 C12orf54Q6X4T0 127 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 LIAT1Q6ZQX7 453 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 THNSL2Q86YJ6 484 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 OR8H3Q8N146 312 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 DTX3Q8N9I9 347 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 OR4F5Q8NH21 305 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 SNAPC3Q92966 411 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 RBM14Q96PK6 669 aaKnown RBP7.83□□□□□ -1.16
CLN3-220ENST00000566040 NABP2Q9BQ15 211 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 WNT10AQ9GZT5 417 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 C11orf54Q9H0W9 315 aaPredicted RBP7.83□□□□□ -1.16
CLN3-220ENST00000566040 RBM38Q9H0Z9 239 aaKnown RBP7.83□□□□□ -1.16
CLN3-220ENST00000566040 MIXL1Q9H2W2 232 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 RIMS4Q9H426 269 aaPredicted RBP7.83□□□□□ -1.16
CLN3-220ENST00000566040 RANBP3Q9H6Z4 567 aaPredicted RBP7.83□□□□□ -1.16
CLN3-220ENST00000566040 VCX3AQ9NNX9 186 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 AMMECR1Q9Y4X0 333 aaPredicted RBP7.83□□□□□ -1.16
CLN3-220ENST00000566040 TNCP24821 2201 aa7.83□□□□□ -1.16
CLN3-220ENST00000566040 FABP7O15540 132 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 IGLV2-14P01704 120 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 GSTP1P09211 210 aaKnown RBP7.82□□□□□ -1.16
CLN3-220ENST00000566040 DTYMKP23919 212 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 CEACAM3P40198 252 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 RAB7AP51149 207 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 SRSF7Q16629 238 aaKnown RBP eCLIP7.82□□□□□ -1.16
CLN3-220ENST00000566040 STEAP3Q658P3 488 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 C10orf99Q6UWK7 81 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 GVQW1Q8N7I0 195 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 C5orf56Q8N8D9 126 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 OR10X1Q8NGY0 326 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 SETD6Q8TBK2 473 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 IL1F10Q8WWZ1 152 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 RPEQ96AT9 228 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 GALMQ96C23 342 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 ABHD14BQ96IU4 210 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 EAF1Q96JC9 268 aaPredicted RBP7.82□□□□□ -1.16
CLN3-220ENST00000566040 SLC25A33Q9BSK2 321 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 AUNIPQ9H7T9 357 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 CHMP1AQ9HD42 196 aaPredicted RBP7.82□□□□□ -1.16
CLN3-220ENST00000566040 ABRACLQ9P1F3 81 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 SLC23A1Q9UHI7 598 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 RNF114Q9Y508 228 aa7.82□□□□□ -1.16
CLN3-220ENST00000566040 METTL21EPA6NDL7 271 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 BTBD17A6NE02 478 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 LINC01548A6NM66 108 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 IGKV1D-33P01593 117 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 IGKV1-33P01594 117 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 HLA-DQB1P01920 261 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 CT45A6P0DMU7 189 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms