RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 NUDT4Q9NZJ9 180 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 DNAJC27Q9NZQ0 273 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 P2RX2Q9UBL9 471 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 CD84Q9UIB8 345 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 B9D1Q9UPM9 204 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 SLC17A4Q9Y2C5 497 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 LSM2Q9Y333 95 aaKnown RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 UFC1Q9Y3C8 167 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 HDGFL3Q9Y3E1 203 aa2.8□□□□□ -1.96
VPS35-203ENST00000562420 TDRD15B5MCY1 1934 aaKnown RBP2.8□□□□□ -1.96
VPS35-203ENST00000562420 LAMA4Q16363 1823 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 ARID2Q68CP9 1835 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 SIPA1L3O60292 1781 aaPredicted RBP2.79□□□□□ -1.96
VPS35-203ENST00000562420 ZNF831Q5JPB2 1677 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 COL16A1Q07092 1604 aaPredicted RBP2.79□□□□□ -1.96
VPS35-203ENST00000562420 hCG_1818297A0A087WSY0 165 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 ZNF816-ZNF321PA0A0X1KG74 233 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 KIR2DS1A0A191URI9 304 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 hADV38S2A0JD32 116 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 LRP5LA4QPB2 252 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 A6NDN8 102 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 TLCD2A6NGC4 264 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 FAM183AA6NL82 134 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 KRTAP9-6A8MVA2 160 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 H3BTX0 84 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 FXYD1O00168 92 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 SULT2B1O00204 365 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 SIRPB1O00241 398 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 ZNF593O00488 134 aaPredicted RBP2.79□□□□□ -1.96
VPS35-203ENST00000562420 DEGS1O15121 323 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 OR2J3O76001 311 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 CLDN1O95832 211 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 SOD1P00441 154 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 IFNW1P05000 195 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 ATP1B1P05026 303 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 LAMP1P11279 417 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 AZU1P20160 251 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 AADACP22760 399 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 SHC1P29353 583 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 ARL2P36404 184 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 RPL13AP40429 203 aaKnown RBP2.79□□□□□ -1.96
VPS35-203ENST00000562420 GUCA1AP43080 201 aaPredicted RBP2.79□□□□□ -1.96
VPS35-203ENST00000562420 TNFRSF4P43489 277 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 REG1BP48304 166 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 CX3CR1P49238 355 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 CSRP3P50461 194 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 HSD52Q0P140 79 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 FUT7Q11130 342 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 EDDM3AQ14507 147 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 CLINT1Q14677 625 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 GINS1Q14691 196 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 KIR2DS1Q14954 304 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 ELOBQ15370 118 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 SSX1Q16384 188 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 SNRNP35Q16560 246 aaKnown RBP2.79□□□□□ -1.96
VPS35-203ENST00000562420 ZSWIM7Q19AV6 140 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 SLC25A52Q3SY17 297 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 TPTE2P1Q5T6R2 138 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 C1orf189Q5VU69 101 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 PODNL1Q6PEZ8 512 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 OPN5Q6U736 354 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 FOXI2Q6ZQN5 318 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 DNM1P46Q6ZS02 220 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 STHQ8IWL8 128 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 BLIDQ8IZY5 108 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 KRTCAP2Q8N6L1 136 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 FER1L6-AS1Q8NA97 138 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 ST6GALNAC3Q8NDV1 305 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 B3GNT7Q8NFL0 401 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 OR6K6Q8NGW6 343 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 OR13C6PQ8NH95 151 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 HAVCR2Q8TDQ0 301 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 SMIM4Q8WVI0 70 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 ST8SIA1Q92185 356 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 FAM3CQ92520 227 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 PTX4Q96A99 478 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 FGGYQ96C11 551 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 SLC35G5Q96KT7 338 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 RASL10BQ96S79 203 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 ATF6BQ99941 703 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 OVOL2Q9BRP0 275 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 VAMP8Q9BV40 100 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 RBM24Q9BX46 236 aaKnown RBP2.79□□□□□ -1.96
VPS35-203ENST00000562420 DPY30Q9C005 99 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 POLR2J2Q9GZM3 115 aaKnown RBP2.79□□□□□ -1.96
VPS35-203ENST00000562420 PARLQ9H300 379 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 C1orf198Q9H425 327 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 REEP1Q9H902 201 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 CBLN4Q9NTU7 201 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 TMEM106BQ9NUM4 274 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 ASF1BQ9NVP2 202 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 NECAP2Q9NVZ3 263 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 CCDC167Q9P0B6 97 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 NAT8BQ9UHF3 227 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 HSPB8Q9UJY1 196 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 ERG28Q9UKR5 140 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 CYSLTR1Q9Y271 337 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 TSSC4Q9Y5U2 329 aaPredicted RBP2.79□□□□□ -1.96
VPS35-203ENST00000562420 R4GN57 208 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 V9GYY9 64 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms