RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PLEKHF2Q9H8W4 249 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 ZNF160Q9HCG1 818 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 RPRMQ9NS64 109 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 ALKBH4Q9NXW9 302 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 MUC6Q6W4X9 2439 aa11.39□□□□□ -0.59
CLK3-206ENST00000562078 IGKV1D-43A0A0B4J1Z2 117 aa11.39□□□□□ -0.59
CLK3-206ENST00000562078 NKX2-6A6NCS4 301 aa11.39□□□□□ -0.59
CLK3-206ENST00000562078 TYMSP04818 313 aa11.39□□□□□ -0.59
CLK3-206ENST00000562078 COX6A1P12074 109 aa11.39□□□□□ -0.59
CLK3-206ENST00000562078 NBL1P41271 181 aa11.39□□□□□ -0.59
CLK3-206ENST00000562078 HINT1P49773 126 aaPredicted RBP11.39□□□□□ -0.59
CLK3-206ENST00000562078 UBE2NP61088 152 aaKnown RBP11.39□□□□□ -0.59
CLK3-206ENST00000562078 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.39□□□□□ -0.59
CLK3-206ENST00000562078 SAXO1Q8IYX7 474 aa11.39□□□□□ -0.59
CLK3-206ENST00000562078 OR5AS1Q8N127 324 aa11.39□□□□□ -0.59
CLK3-206ENST00000562078 OR11L1Q8NGX0 322 aa11.39□□□□□ -0.59
CLK3-206ENST00000562078 ZNF845Q96IR2 970 aaPredicted RBP11.39□□□□□ -0.59
CLK3-206ENST00000562078 KCNK17Q96T54 332 aa11.39□□□□□ -0.59
CLK3-206ENST00000562078 EMC6Q9BV81 110 aa11.39□□□□□ -0.59
CLK3-206ENST00000562078 CHCHD2Q9Y6H1 151 aaPredicted RBP11.39□□□□□ -0.59
CLK3-206ENST00000562078 IL3RAP26951 378 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 BIDP55957 195 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 MTCP1P56278 107 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 MLF1P58340 268 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 UBE2G2P60604 165 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 RPL15P61313 204 aaKnown RBP11.38□□□□□ -0.59
CLK3-206ENST00000562078 RPL19P84098 196 aaKnown RBP11.38□□□□□ -0.59
CLK3-206ENST00000562078 TMEM41BQ5BJD5 291 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 SLC25A53Q5H9E4 307 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 Q6ZN92 141 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 ERASQ7Z444 233 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 GPER1Q99527 375 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 PECRQ9BY49 303 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 HIPK2Q9H2X6 1198 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 PATZ1Q9HBE1 687 aaKnown RBP11.38□□□□□ -0.59
CLK3-206ENST00000562078 LYRM2Q9NU23 88 aaPredicted RBP11.38□□□□□ -0.59
CLK3-206ENST00000562078 TP53TG3Q9ULZ0 132 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 SLC45A2Q9UMX9 530 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 NCOA6Q14686 2063 aaPredicted RBP11.38□□□□□ -0.59
CLK3-206ENST00000562078 A0A1W2PNR3 127 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 F6UZH7 168 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 PHF1O43189 567 aaPredicted RBP11.38□□□□□ -0.59
CLK3-206ENST00000562078 TMEM50AO95807 157 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 ZNF20P17024 532 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 LINC00310P59036 64 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 TAS2R30P59541 319 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 DNM1P34Q6PK57 102 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 C1QL2Q7Z5L3 287 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 PIP4P1Q86T03 277 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 PLPPR1Q8TBJ4 325 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 CORO2AQ92828 525 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 RNF2Q99496 336 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 TXN2Q99757 166 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 FAM206AQ9NX38 181 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 WIPI2Q9Y4P8 454 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 RNF114Q9Y508 228 aa11.38□□□□□ -0.59
CLK3-206ENST00000562078 RBM7Q9Y580 266 aaKnown RBP11.38□□□□□ -0.59
CLK3-206ENST00000562078 MSTNO14793 375 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 ZNF728P0DKX0 622 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 ZNF823P16415 610 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 ECI1P42126 302 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 TPPP2P59282 170 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 OCIAD2Q56VL3 154 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 CXorf66Q5JRM2 361 aaPredicted RBP11.37□□□□□ -0.59
CLK3-206ENST00000562078 TMEM164Q5U3C3 297 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 C6orf201Q7Z4U5 140 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 LRTM2Q8N967 370 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 OR5T1Q8NG75 326 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 OR2Y1Q8NGV0 311 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 OR51E1Q8TCB6 317 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 IMMP1LQ96LU5 166 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 P2RX4Q99571 388 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 RSG1Q9BU20 258 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 PBOV1Q9GZY1 135 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 SLC2A9Q9NRM0 540 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 ZNF292O60281 2723 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 AHCTF1Q8WYP5 2266 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 IGHV2OR16-5A0A0B4J2B6 119 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 NPIPB13A6NJU9 1138 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 NPIPB4C9JG80 1138 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 PLA2G5P39877 138 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 NKX2-1P43699 371 aaPredicted RBP11.37□□□□□ -0.59
CLK3-206ENST00000562078 HNRNPA3P51991 378 aaKnown RBP11.37□□□□□ -0.59
CLK3-206ENST00000562078 RRADP55042 308 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 EIF3IQ13347 325 aaKnown RBP11.37□□□□□ -0.59
CLK3-206ENST00000562078 EXT1Q16394 746 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 SPATA45Q537H7 98 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 FAM78BQ5VT40 261 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 FAM57BQ71RH2 274 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 TCF23Q7RTU1 214 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 COMMD2Q86X83 199 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 KCNE4Q8WWG9 221 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 CST9LQ9H4G1 147 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 DECR2Q9NUI1 292 aa11.37□□□□□ -0.59
CLK3-206ENST00000562078 A0A0U1RQK1 487 aa11.36□□□□□ -0.59
CLK3-206ENST00000562078 SPAARA0A1B0GVQ0 90 aa11.36□□□□□ -0.59
CLK3-206ENST00000562078 HYPMO75409 117 aa11.36□□□□□ -0.59
CLK3-206ENST00000562078 KBTBD11O94819 623 aa11.36□□□□□ -0.59
CLK3-206ENST00000562078 CD46P15529 392 aa11.36□□□□□ -0.59
CLK3-206ENST00000562078 ARL6IP1Q15041 203 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms