RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 CFIP05156 583 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 GPM6AP51674 278 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 ZNF154Q13106 437 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 ZNF266Q14584 549 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 EXT1Q16394 746 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 LDLRAD2Q5SZI1 272 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 ZNF880Q6PDB4 577 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 CPT1CQ8TCG5 803 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 TBX15Q96SF7 602 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 CCL28Q9NRJ3 127 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 FKBP11Q9NYL4 201 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 PAM16Q9Y3D7 125 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 A0A1W2PN81 502 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 LMO1P25800 156 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 CHRNA7P36544 502 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 P2RY6Q15077 328 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 MMDQ15546 238 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 SPSB3Q6PJ21 355 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 SELENOHQ8IZQ5 122 aaKnown RBP9.69□□□□□ -0.86
CUX1-218ENST00000560541 AGBL5Q8NDL9 886 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 WDR54Q9H977 334 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 CLEC5AQ9NY25 188 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 OTX2P32243 289 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 CLDN15P56746 228 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 MLF1P58340 268 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 RPL19P84098 196 aaKnown RBP9.68□□□□□ -0.86
CUX1-218ENST00000560541 COL10A1Q03692 680 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 SRYQ05066 204 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 TMEM211Q6ICI0 200 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 CYB561D1Q8N8Q1 229 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 SH2D2AQ9NP31 389 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 GJE1A6NN92 205 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 P04436 131 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 OR8B8Q15620 311 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 ODF3L1Q8IXM7 274 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 OR4X1Q8NH49 305 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 FGF23Q9GZV9 251 aaPredicted RBP9.68□□□□□ -0.86
CUX1-218ENST00000560541 PLEKHF2Q9H8W4 249 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 GPR35Q9HC97 309 aa9.68□□□□□ -0.86
CUX1-218ENST00000560541 NDUFS8O00217 210 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 CHST1O43916 411 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 CDS2O95674 445 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 IGFBP7Q16270 282 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 GBGT1Q8N5D6 347 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 STPG4Q8N801 248 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 LFNGQ8NES3 379 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 ZNF488Q96MN9 340 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 HIST1H2AAQ96QV6 131 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 C11orf1Q9H5F2 150 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 LYRM2Q9NU23 88 aaPredicted RBP9.67□□□□□ -0.86
CUX1-218ENST00000560541 TCFL5Q9UL49 500 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 R4GN57 208 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 ZDBF2Q9HCK1 2354 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 SLC22A20A6NK97 555 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 PITX3O75364 302 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 NDUFB8O95169 186 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 HLA-HP01893 362 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 MMP9P14780 707 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 OR5T1Q8NG75 326 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 OR51H1Q8NH63 302 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 RNASEH2CQ8TDP1 164 aaKnown RBP9.67□□□□□ -0.86
CUX1-218ENST00000560541 TMEM37Q8WXS4 190 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 IL36GQ9NZH8 169 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 NBEAQ8NFP9 2946 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 TRAV34A0A0B4J273 112 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 PATE3B3GLJ2 98 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 K7EP13 123 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 FOXG1P55316 489 aaPredicted RBP9.67□□□□□ -0.86
CUX1-218ENST00000560541 MYPOPQ86VE0 399 aaPredicted RBP9.67□□□□□ -0.86
CUX1-218ENST00000560541 TDHQ8IZJ6 230 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 OR2Y1Q8NGV0 311 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 DEPPQ9NTK1 212 aa9.67□□□□□ -0.86
CUX1-218ENST00000560541 IGKV1-6A0A0C4DH72 117 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 C5orf49A4QMS7 147 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 PINLYPA6NC86 204 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 M0R296 226 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 OR5G3P0C626 314 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 GDF1P27539 372 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 SRD5A2P31213 254 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 TMEM267Q0VDI3 215 aaPredicted RBP9.66□□□□□ -0.86
CUX1-218ENST00000560541 PRDX4Q13162 271 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 IL11RAQ14626 422 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 UNQ5815/PRO19632Q6UWF5 114 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 IL22RA1Q8N6P7 574 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 OR2V1Q8NHB1 315 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 CORO2AQ92828 525 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 SLC35E1Q96K37 410 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 SIGLEC12Q96PQ1 595 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 TRAV39A0A0B4J263 110 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 A0A0G2JRQ6 117 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 F6UZH7 168 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 HS3ST1O14792 307 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 TDGF1P13385 188 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 FOLR3P41439 243 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 KRTAP27-1Q3LI81 207 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 HIKESHIQ53FT3 197 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 WDR25Q64LD2 544 aaPredicted RBP9.66□□□□□ -0.86
CUX1-218ENST00000560541 ZNF429Q86V71 674 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 UBALD1Q8TB05 177 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 IL22RA2Q969J5 263 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms