RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	PIPOX	Q9P0Z9	390 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	KIAA1456	Q9P272	454 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	BOLA1	Q9Y3E2	137 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	SLC22A1	O15245	554 aa		11.11	□□□□□ -0.63
TPM1-223	ENST00000560445	HSMCR30	P0CW71	290 aa		11.11	□□□□□ -0.63
TPM1-223	ENST00000560445	VSIG8	P0DPA2	414 aa		11.11	□□□□□ -0.63
TPM1-223	ENST00000560445	MRPS15	P82914	257 aa	Known RBP	11.11	□□□□□ -0.63
TPM1-223	ENST00000560445	EDARADD	Q8WWZ3	215 aa		11.11	□□□□□ -0.63
TPM1-223	ENST00000560445	DUSP21	Q9H596	190 aa		11.11	□□□□□ -0.63
TPM1-223	ENST00000560445	ZNF107	Q9UII5	783 aa	Predicted RBP	11.11	□□□□□ -0.63
TPM1-223	ENST00000560445	PRKDC	P78527	4128 aa	Known RBP	11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	RAB29	O14966	203 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	IGF1	P05019	195 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	ARSB	P15848	533 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	BLVRB	P30043	206 aa	Predicted RBP	11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	MC5R	P33032	325 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	CDX1	P47902	265 aa	Predicted RBP	11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	MLLT11	Q13015	90 aa	Predicted RBP	11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	HMGN3	Q15651	99 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	LIPK	Q5VXJ0	399 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	SIGIRR	Q6IA17	410 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	TMEM65	Q6PI78	240 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	LRRTM1	Q86UE6	522 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	MRPL41	Q8IXM3	137 aa	Known RBP	11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	FAM71E2	Q8N5Q1	922 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	RNF152	Q8N8N0	203 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	IL1F10	Q8WWZ1	152 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	CENPO	Q9BU64	300 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	KRTAP3-3	Q9BYR6	98 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	KRTAP3-2	Q9BYR7	98 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	ACOT13	Q9NPJ3	140 aa		11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	LSM2	Q9Y333	95 aa	Known RBP	11.1	□□□□□ -0.63
TPM1-223	ENST00000560445	OR5H14	A6NHG9	310 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	SLC17A2	O00624	439 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	ITGB1BP1	O14713	200 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	SLC31A2	O15432	143 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	HSPA12A	O43301	675 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	RBBP9	O75884	186 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	IGHG4	P01861	327 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	PRB2	P02812	416 aa	Predicted RBP	11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	ZBTB25	P24278	435 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	PPP1CC	P36873	323 aa	Known RBP	11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	ZNF134	P52741	427 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	EGFEM1P	Q0D2K5	195 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	TPBG	Q13641	420 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	INSL4	Q14641	139 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	IRF3	Q14653	427 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	RAB11B	Q15907	218 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	C10orf99	Q6UWK7	81 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	IZUMO2	Q6UXV1	221 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	ZNF833P	Q6ZTB9	187 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	C8orf86	Q6ZUL3	223 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	PRSS48	Q7RTY5	328 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	SVOP	Q8N4V2	548 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	OR5M8	Q8NGP6	311 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	SETD6	Q8TBK2	473 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	TMEM203	Q969S6	136 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	SULT4A1	Q9BR01	284 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	FAAP24	Q9BTP7	215 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	C12orf4	Q9NQ89	552 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	PLSCR3	Q9NRY6	295 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	HSF4	Q9ULV5	492 aa		11.09	□□□□□ -0.63
TPM1-223	ENST00000560445	TRBV6-6	A0A0A6YYG2	114 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	TMEM14DP	A8MWL7	114 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	CCL24	O00175	119 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	PDCD5	O14737	125 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	NBR2	O15453	112 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	RAMP3	O60896	148 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	NAPSA	O96009	420 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	HLA-DRB1	P01911	266 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	CD37	P11049	281 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	CRHBP	P24387	322 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	ACTB	P60709	375 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	KIR2DS1	Q14954	304 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	FAM27D1	Q5T7N8	215 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	C6orf201	Q7Z4U5	140 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	TCTEX1D1	Q8N7M0	179 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	OR52L2P	Q8NGH6	319 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	OR56B1	Q8NGI3	324 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	C4orf3	Q8WVX3	66 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	CNBD2	Q96M20	576 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	P2RX4	Q99571	388 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	SLC23A1	Q9UHI7	598 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	LINC00527	Q9UJ94	153 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	RNF150	Q9ULK6	438 aa		11.08	□□□□□ -0.64
TPM1-223	ENST00000560445	CPE	P16870	476 aa		11.07	□□□□□ -0.64
TPM1-223	ENST00000560445	VHL	P40337	213 aa		11.07	□□□□□ -0.64
TPM1-223	ENST00000560445	SERPINB10	P48595	397 aa		11.07	□□□□□ -0.64
TPM1-223	ENST00000560445	UNC119	Q13432	240 aa		11.07	□□□□□ -0.64
TPM1-223	ENST00000560445	GNMT	Q14749	295 aa		11.07	□□□□□ -0.64
TPM1-223	ENST00000560445	ETV3L	Q6ZN32	361 aa		11.07	□□□□□ -0.64
TPM1-223	ENST00000560445	MGLL	Q99685	303 aa		11.07	□□□□□ -0.64
TPM1-223	ENST00000560445	RNF5	Q99942	180 aa		11.07	□□□□□ -0.64
TPM1-223	ENST00000560445	NABP2	Q9BQ15	211 aa		11.07	□□□□□ -0.64
TPM1-223	ENST00000560445	MRPL20	Q9BYC9	149 aa	Known RBP	11.07	□□□□□ -0.64
TPM1-223	ENST00000560445	RAB26	Q9ULW5	256 aa		11.07	□□□□□ -0.64
TPM1-223	ENST00000560445	SAA2-SAA4	A0A096LPE2	208 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	ZNF736	B4DX44	427 aa	Predicted RBP	11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	RPLP1	P05386	114 aa	Known RBP	11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	SAA2	P0DJI9	122 aa	Predicted RBP	11.06	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms