RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 UBALD1Q8TB05 177 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 MAFIPQ8WZ33 124 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 BORCS5Q969J3 196 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 MALSU1Q96EH3 234 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 MMP28Q9H239 520 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 PIPOXQ9P0Z9 390 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 DPM3Q9P2X0 92 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 ZNF221Q9UK13 617 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 PSG11Q9UQ72 335 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 VPS13CQ709C8 3753 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 FAM172BPA6NC97 362 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 DISC1C4P0D8 188 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 FSHBP01225 129 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 FBP1P09467 338 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 AKAIN1P0CW23 69 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 OR5H8P0DN80 308 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 IGHV4-38-2P0DP08 117 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 CD40LGP29965 261 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 PPP1CCP36873 323 aaKnown RBP7.52□□□□□ -1.21
LDLR-210ENST00000559340 GDNFP39905 211 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 GNG10P50151 68 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 LUMP51884 338 aaPredicted RBP7.52□□□□□ -1.21
LDLR-210ENST00000559340 DGCR2P98153 550 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 KLRD1Q13241 179 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 HLA-DRB5Q30154 266 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 IGSF11Q5DX21 431 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 RNASE12Q5GAN4 147 aaKnown RBP7.52□□□□□ -1.21
LDLR-210ENST00000559340 RNASE10Q5GAN6 216 aaKnown RBP7.52□□□□□ -1.21
LDLR-210ENST00000559340 KLF17Q5JT82 389 aaPredicted RBP7.52□□□□□ -1.21
LDLR-210ENST00000559340 TRIQKQ629K1 86 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 HCP5Q6MZN7 132 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 C1orf229Q6ZS94 237 aaPredicted RBP7.52□□□□□ -1.21
LDLR-210ENST00000559340 SLC25A48Q6ZT89 311 aaKnown RBP7.52□□□□□ -1.21
LDLR-210ENST00000559340 PDZD9Q8IXQ8 264 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 OR6F1Q8NGZ6 308 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 GIMAP1Q8WWP7 306 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 GCDHQ92947 438 aaPredicted RBP7.52□□□□□ -1.21
LDLR-210ENST00000559340 ZDHHC16Q969W1 377 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 RPEQ96AT9 228 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 S1PR3Q99500 378 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 ABHD14AQ9BUJ0 271 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 RDH8Q9NYR8 311 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 EHFQ9NZC4 300 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 KLK11Q9UBX7 282 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 GAB2Q9UQC2 676 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 RBMX2Q9Y388 322 aaKnown RBP7.52□□□□□ -1.21
LDLR-210ENST00000559340 OR2W1Q9Y3N9 320 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 V9GYH0 126 aa7.52□□□□□ -1.21
LDLR-210ENST00000559340 IGKV1D-8A0A087WSZ0 117 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 A0A1W2PRD5 423 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 A0A1W2PRF3 423 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 A0A1W2PRM7 423 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 CENPXA8MT69 81 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 ODF3BA8MYP8 253 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 INAFM1C9JVW0 142 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 BUB1B-PAK6H3BSN5 160 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 RAB29O14966 203 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 TXNL1O43396 289 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 CRLF1O75462 422 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 RAB3DO95716 219 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 IGLV1-47P01700 117 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 PMP2P02689 132 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 GAPDHP04406 335 aaKnown RBP7.51□□□□□ -1.21
LDLR-210ENST00000559340 FAM157CP0CG43 387 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 HLA-DMAP28067 261 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 S100GP29377 79 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 FCGR2CP31995 323 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 BRS3P32247 399 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 PPP5CP53041 499 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 HERV-K104P61576 105 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 DYRK1AQ13627 763 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 CT45A1Q5HYN5 189 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 VAX1Q5SQQ9 334 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 FAM71F2Q6NXP2 309 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 STEAP1BQ6NZ63 245 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 LPCAT3Q6P1A2 487 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 DHRS11Q6UWP2 260 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 Q6ZPA2 131 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 Q71RC1 249 aaPredicted RBP7.51□□□□□ -1.21
LDLR-210ENST00000559340 OVCH2Q7RTZ1 564 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 LYSMD2Q8IV50 215 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 H1FOOQ8IZA3 346 aaPredicted RBP7.51□□□□□ -1.21
LDLR-210ENST00000559340 LYG1Q8N1E2 194 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 TOMM5Q8N4H5 51 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 ARRDC1Q8N5I2 433 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.51□□□□□ -1.21
LDLR-210ENST00000559340 CT45A3Q8NHU0 189 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 ZNF418Q8TF45 676 aaPredicted RBP7.51□□□□□ -1.21
LDLR-210ENST00000559340 SNAPC3Q92966 411 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 CYYR1Q96J86 154 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 JMJD8Q96S16 334 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 CCDC32Q9BV29 185 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 SRRQ9GZT4 340 aa7.51□□□□□ -1.21
LDLR-210ENST00000559340 C11orf54Q9H0W9 315 aaPredicted RBP7.51□□□□□ -1.21
LDLR-210ENST00000559340 ZNF469Q96JG9 3925 aaPredicted RBP7.5□□□□□ -1.21
LDLR-210ENST00000559340 IGHV3OR16-10A0A075B7F0 116 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 IGKV1-6A0A0C4DH72 117 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 ANKRD20A5PA0PJZ0 165 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 BTBD17A6NE02 478 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 LANCL1O43813 399 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms