RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 OR10G7Q8NGN6 311 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 OR2V1Q8NHB1 315 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 VN1R17PQ8TDU5 208 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 DERL1Q9BUN8 251 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 DMDP11532 3685 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 IGKV1-6A0A0C4DH72 117 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 RPL36A-HNRNPH2H7BZ11 118 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 GLB1P16278 677 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 FOXG1P55316 489 aaPredicted RBP9.68□□□□□ -0.86
LDLR-208ENST00000558518 PNRC1Q12796 327 aaPredicted RBP9.68□□□□□ -0.86
LDLR-208ENST00000558518 OIT3Q8WWZ8 545 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 TWSG1Q9GZX9 223 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 TRAV38-1A0A0B4J264 116 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 M0R143 59 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 GDF1P27539 372 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 CEBPDP49716 269 aaPredicted RBP9.67□□□□□ -0.86
LDLR-208ENST00000558518 NUTF2P61970 127 aaKnown RBP9.67□□□□□ -0.86
LDLR-208ENST00000558518 CCL7P80098 99 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 TMEM211Q6ICI0 200 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 DPPA3Q6W0C5 159 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 RPP25LQ8N5L8 163 aaKnown RBP9.67□□□□□ -0.86
LDLR-208ENST00000558518 LRTM2Q8N967 370 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 RFESDQ8TAC1 157 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 CFHR5Q9BXR6 569 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 MRPL37Q9BZE1 423 aaKnown RBP9.67□□□□□ -0.86
LDLR-208ENST00000558518 SMDT1Q9H4I9 107 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 C19orf25Q9UFG5 118 aaPredicted RBP9.67□□□□□ -0.86
LDLR-208ENST00000558518 IGHV3-43A0A0B4J1X8 118 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 NPIPB13A6NJU9 1138 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 B4DEV8 164 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 NPIPB4C9JG80 1138 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 IGKV1D-33P01593 117 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 IGKV1-33P01594 117 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 IGHV3-43DP0DP04 118 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 NMSQ5H8A3 153 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 FAM27BQ5VT28 67 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 MRGPRGQ86SM5 289 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 TPRX1Q8N7U7 411 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 ZIC4Q8N9L1 334 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 ZDHHC16Q969W1 377 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 ZNF552Q9H707 407 aaPredicted RBP9.67□□□□□ -0.86
LDLR-208ENST00000558518 SRD5A3Q9H8P0 318 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 CISD1Q9NZ45 108 aaKnown RBP9.67□□□□□ -0.86
LDLR-208ENST00000558518 SYNGR3O43761 229 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 CA6P23280 308 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 KRTDAPP60985 99 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 TFF3Q07654 80 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 IQCJQ1A5X6 159 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 TDRG1Q3Y452 100 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 CPEB3Q8NE35 698 aaKnown RBP9.67□□□□□ -0.86
LDLR-208ENST00000558518 HINT2Q9BX68 163 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 OR2H1Q9GZK4 316 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 WNT5BQ9H1J7 359 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 C12orf49Q9H741 205 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 ZDHHC11Q9H8X9 412 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 TMEM38BQ9NVV0 291 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 MTCH1Q9NZJ7 389 aa9.67□□□□□ -0.86
LDLR-208ENST00000558518 CHCHD2Q9Y6H1 151 aaPredicted RBP9.67□□□□□ -0.86
LDLR-208ENST00000558518 NUPR1O60356 82 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 RHBDL1O75783 438 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 NDUFB4O95168 129 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 RFPL3SP0C7P2 107 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 UCP3P55916 312 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 CD81P60033 236 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 HIST1H3AP68431 136 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 OR5I1Q13606 314 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 C3AR1Q16581 482 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 BAGE3Q86Y29 109 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 BAGE2Q86Y30 109 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 PLPPR1Q8TBJ4 325 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 KIR2DS1A0A191URI9 304 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 MRPL33O75394 65 aaKnown RBP9.66□□□□□ -0.86
LDLR-208ENST00000558518 GRPP07492 148 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 C1QTNF9P0C862 333 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 CEACAM6P40199 344 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 KIR2DS4P43632 304 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 KIR2DS1Q14954 304 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 RPS19BP1Q86WX3 136 aaKnown RBP9.66□□□□□ -0.86
LDLR-208ENST00000558518 ZNF525Q8N782 197 aa9.66□□□□□ -0.86
LDLR-208ENST00000558518 CNOT1A5YKK6 2376 aaKnown RBP9.66□□□□□ -0.86
LDLR-208ENST00000558518 LOC102725191A0A1B0GVB3 256 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 C11orf94C9JXX5 98 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 DEGS1O15121 323 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 BCAT2O15382 392 aaPredicted RBP9.65□□□□□ -0.86
LDLR-208ENST00000558518 LILRA1O75019 489 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 NPSP0C0P6 89 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 COX5BP10606 129 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 GCH1P30793 250 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 SSR4P51571 173 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 CNN1P51911 297 aaKnown RBP9.65□□□□□ -0.86
LDLR-208ENST00000558518 ARF1P84077 181 aaKnown RBP9.65□□□□□ -0.86
LDLR-208ENST00000558518 ZFP36L1Q07352 338 aaKnown RBP9.65□□□□□ -0.86
LDLR-208ENST00000558518 FOXO1Q12778 655 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 ACSM6Q6P461 480 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 OR5D13Q8NGL4 314 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 OR10D3Q8NH80 312 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 TAF15Q92804 592 aaKnown RBP eCLIP9.65□□□□□ -0.86
LDLR-208ENST00000558518 TMEM56Q96MV1 263 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 CDCA3Q99618 268 aaPredicted RBP9.65□□□□□ -0.86
LDLR-208ENST00000558518 TIMM8BQ9Y5J9 83 aaPredicted RBP9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms