RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TNFSF4P23510 183 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 CD40P25942 277 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 RPL12P30050 165 aaKnown RBP10.68□□□□□ -0.7
SHMT2-229ENST00000557348 PIGPP57054 158 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 RND3P61587 244 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 PKIAP61925 76 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 SUPT4H1P63272 117 aaKnown RBP10.68□□□□□ -0.7
SHMT2-229ENST00000557348 FAM27E3Q08E93 113 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 CLINT1Q14677 625 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 WDR82Q6UXN9 313 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 ZNF497Q6ZNH5 498 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 REC114Q7Z4M0 266 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 BATF2Q8N1L9 274 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 ZNF565Q8N9K5 539 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 ST6GALNAC3Q8NDV1 305 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 RDH5Q92781 318 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 TOMM40LQ969M1 308 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 ERGIC1Q969X5 290 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 HS3ST6Q96QI5 342 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 DIRC2Q96SL1 478 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 GINS3Q9BRX5 216 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 TMEM231Q9H6L2 316 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 NAA60Q9H7X0 242 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 METTL8Q9H825 291 aaKnown RBP10.68□□□□□ -0.7
SHMT2-229ENST00000557348 TAAR3PQ9P1P4 343 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 NSG2Q9Y328 171 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 GTF3C1Q12789 2109 aa10.68□□□□□ -0.7
SHMT2-229ENST00000557348 INTS1Q8N201 2190 aaKnown RBP10.67□□□□□ -0.7
SHMT2-229ENST00000557348 UMAD1C9J7I0 102 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 TSTD3H0UI37 97 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 H0YL77 283 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 TXNL1O43396 289 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 F12P00748 615 aaPredicted RBP10.67□□□□□ -0.7
SHMT2-229ENST00000557348 DUSP1P28562 367 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 GPX4P36969 197 aaPredicted RBP10.67□□□□□ -0.7
SHMT2-229ENST00000557348 PAX5Q02548 391 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 HNF4GQ14541 408 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 SLC9A3R2Q15599 337 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 TRAT1Q6PIZ9 186 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 ACP7Q6ZNF0 438 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 Q6ZR03 302 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 PPP1R35Q8TAP8 253 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 TMEM171Q8WVE6 324 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 RTN4IP1Q8WWV3 396 aaPredicted RBP10.67□□□□□ -0.7
SHMT2-229ENST00000557348 YPEL4Q96NS1 127 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 ZDHHC8Q9ULC8 765 aa10.67□□□□□ -0.7
SHMT2-229ENST00000557348 KMT2BQ9UMN6 2715 aaPredicted RBP10.67□□□□□ -0.7
SHMT2-229ENST00000557348 TMEM30CPA0ZSE6 113 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 DEDDO75618 318 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 TUSC2O75896 110 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 NQO2P16083 231 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 AADACP22760 399 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 CCKARP32238 428 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 GATA4P43694 442 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 P2RY1P47900 373 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 FXYD4P59646 89 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 KRBOX4Q5JUW0 171 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 RPL7L1Q6DKI1 246 aaKnown RBP10.66□□□□□ -0.7
SHMT2-229ENST00000557348 SLC35E4Q6ICL7 350 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 SSX9Q7RTT3 188 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 C11orf53Q8IXP5 236 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 CMTM1Q8IZ96 169 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 LRTM2Q8N967 370 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 OR2Z1Q8NG97 314 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 OR5R1Q8NH85 324 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 OR10J5Q8NHC4 309 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 RAB24Q969Q5 203 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 SCRT1Q9BWW7 348 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 MSL2Q9HCI7 577 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 SLC2A9Q9NRM0 540 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 MBNL3Q9NUK0 354 aaKnown RBP10.66□□□□□ -0.7
SHMT2-229ENST00000557348 TMEM242Q9NWH2 141 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 KCNIP1Q9NZI2 227 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 OR5AC2Q9NZP5 309 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 DUSP13Q9UII6 198 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 WIPI2Q9Y4P8 454 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 MSGN1A6NI15 193 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 M0R036 132 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 HSPB6O14558 160 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 SNRNP70P08621 437 aaKnown RBP10.66□□□□□ -0.7
SHMT2-229ENST00000557348 PAX1P15863 534 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 PI3P19957 117 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 CA7P43166 264 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 ASCL1P50553 236 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 TAS2R60P59551 318 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 RAB32Q13637 225 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 LGI3Q8N145 548 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 OR10G4Q8NGN3 311 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 FAM216AQ8WUB2 273 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 SECTM1Q8WVN6 248 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 MRPL24Q96A35 216 aaKnown RBP10.66□□□□□ -0.7
SHMT2-229ENST00000557348 OR2S2Q9NQN1 319 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 IL19Q9UHD0 177 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 TRAPPC2LQ9UL33 140 aa10.66□□□□□ -0.7
SHMT2-229ENST00000557348 DUXBA0A1W2PPF3 345 aa10.65□□□□□ -0.7
SHMT2-229ENST00000557348 SRRM5B3KS81 715 aa10.65□□□□□ -0.7
SHMT2-229ENST00000557348 SIRPB1O00241 398 aa10.65□□□□□ -0.7
SHMT2-229ENST00000557348 KIAA0141Q14154 515 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-229ENST00000557348 ANKRD55Q3KP44 614 aa10.65□□□□□ -0.7
SHMT2-229ENST00000557348 ALKBH2Q6NS38 261 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms