RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 FAM110DQ8TAY7 271 aaPredicted RBP9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 MAFIPQ8WZ33 124 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 GALMQ96C23 342 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 EAF1Q96JC9 268 aaPredicted RBP9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 WNT10AQ9GZT5 417 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 Q9N2K0 584 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 HSF4Q9ULV5 492 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 TET2Q6N021 2002 aaPredicted RBP9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 TRBV6-6A0A0A6YYG2 114 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 IGKV1-6A0A0C4DH72 117 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 LINC01548A6NM66 108 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 M0QZ24 198 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 RAB27BO00194 218 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 ST8SIA5O15466 376 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 CD3GP09693 182 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 HTD2P86397 168 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 C16orf82Q7Z2V1 217 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 ZNF554Q86TJ5 538 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 TGIF2LXQ8IUE1 241 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 TSPAN14Q8NG11 270 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 OR10R2Q8NGX6 335 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 RAB3CQ96E17 227 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 CMSS1Q9BQ75 279 aaKnown RBP9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 ABHD14AQ9BUJ0 271 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 MRPL20Q9BYC9 149 aaKnown RBP9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 C12orf4Q9NQ89 552 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 DAPK2Q9UIK4 370 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 JPT1Q9UK76 154 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 MOB4Q9Y3A3 225 aa9.2□□□□□ -0.94
CCDC88C-208ENST00000554165 NOTOA8MTQ0 251 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 ADARB2-AS1A8MUL3 147 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 YPEL1O60688 119 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 IL3RAP26951 378 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 ZNF137PP52743 207 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 HLA-DRB3P79483 266 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 EBI3Q14213 229 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 NSUN5P1Q3KNT7 163 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 TMEM30BQ3MIR4 351 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 Q3ZCU0 254 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 RPL39P5Q59GN2 51 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 TCTEX1D4Q5JR98 221 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 C11orf88Q6PI97 169 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 Q8N6K4 173 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 C5orf56Q8N8D9 126 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 RITA1Q96K30 269 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 NOL4LQ96MY1 436 aaPredicted RBP9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 YPEL2Q96QA6 119 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 CITED2Q99967 270 aaPredicted RBP9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 ATG5Q9H1Y0 275 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 IFI27L2Q9H2X8 130 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 RAB9BQ9NP90 201 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 PLSCR3Q9NRY6 295 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 ABRACLQ9P1F3 81 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 SLC23A1Q9UHI7 598 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 ZNF230Q9UIE0 474 aaPredicted RBP9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 LINC00527Q9UJ94 153 aa9.19□□□□□ -0.94
CCDC88C-208ENST00000554165 A0A087WXM4 84 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 SAA2-SAA4A0A096LPE2 208 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 A0A1W2PRX2 142 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 MFNGO00587 321 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 LANCL1O43813 399 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 FBXO24O75426 580 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 SAA2P0DJI9 122 aaPredicted RBP9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 HIST1H1DP16402 221 aaKnown RBP9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 RAB6AP20340 208 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 F2RL1P55085 397 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 LINC00205P59089 165 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 LSM3P62310 102 aaKnown RBP9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 IGSF11Q5DX21 431 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 STEAP3Q658P3 488 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 SFXN4Q6P4A7 337 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 MOB1BQ7L9L4 216 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 IZUMO1Q8IYV9 350 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 OR5AU1Q8NGC0 362 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 OR5H6Q8NGV6 325 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 LGALS14Q8TCE9 139 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 YIPF6Q96EC8 236 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 ABHD14BQ96IU4 210 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 AKR1E2Q96JD6 320 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 KCTD7Q96MP8 289 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 ZNF251Q9BRH9 671 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 C11orf54Q9H0W9 315 aaPredicted RBP9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 RIMS4Q9H426 269 aaPredicted RBP9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 RNF150Q9ULK6 438 aa9.18□□□□□ -0.94
CCDC88C-208ENST00000554165 IGKV1D-8A0A087WSZ0 117 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 NCBP2LA6PVI3 153 aaKnown RBP9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 TRDCB7Z8K6 153 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 PEX14O75381 377 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 TNFAIP8O95379 198 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 MOSP00540 346 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 FCGR3AP08637 254 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 CSF1P09603 554 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 GSTT2P0CG29 244 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 GSTT2BP0CG30 244 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 CNTFRP26992 372 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 CD1BP29016 333 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 CEACAM6P40199 344 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 LSAMPQ13449 338 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 CDNFQ49AH0 187 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 GLDNQ6ZMI3 551 aaPredicted RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms