RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 PPP1CCP36873 323 aaKnown RBP8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 PSMD7P51665 324 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 OR10A3P58181 314 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 CD83Q01151 205 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 HES1Q14469 280 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 KCTD21Q4G0X4 260 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 ARSJQ5FYB0 599 aaPredicted RBP8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 PLAC9Q5JTB6 97 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 LY6G6FQ5SQ64 297 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 HES5Q5TA89 166 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 NR2C2APQ86WQ0 139 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 NDUFA11Q86Y39 141 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 ODF3L1Q8IXM7 274 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 OR5AU1Q8NGC0 362 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 DGCR14Q96DF8 476 aaKnown RBP8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 RBMXL1Q96E39 390 aaKnown RBP8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 EAF1Q96JC9 268 aaPredicted RBP8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 YPEL2Q96QA6 119 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 HDHD3Q9BSH5 251 aaPredicted RBP8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 PLSCR3Q9NRY6 295 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 PLEKHJ1Q9NW61 149 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 STEAP1Q9UHE8 339 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 AK3Q9UIJ7 227 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 HSF4Q9ULV5 492 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 KMT2CQ8NEZ4 4911 aaKnown RBP8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 IFITM5A6NNB3 132 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 LANCL1O43813 399 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 PEX14O75381 377 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 OPN1MWP04001 364 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 TFAP2AP05549 437 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 OPN1MW2P0DN77 364 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 OPN1MW3P0DN78 364 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 VEGFCP49767 419 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 NSUN5P1Q3KNT7 163 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 C9orf152Q5JTZ5 239 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 C22orf42Q6IC83 251 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 C10orf99Q6UWK7 81 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 CENPVQ7Z7K6 275 aaPredicted RBP8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 TGIF2LXQ8IUE1 241 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 TSPAN14Q8NG11 270 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 OR2T10Q8NGZ9 312 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 GALMQ96C23 342 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 ARHGAP5-AS1Q96IT6 56 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 ABHD14AQ9BUJ0 271 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 PECRQ9BY49 303 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 RIMS4Q9H426 269 aaPredicted RBP8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 PTTG2Q9NZH5 202 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 RAB22AQ9UL26 194 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 KCNK7Q9Y2U2 307 aa8.14□□□□□ -1.11
CCDC88C-206ENST00000553437 A0A0B4J203 849 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 PDCD5O14737 125 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 TXNL1O43396 289 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 PSMB9P28065 219 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 FGF9P31371 208 aaPredicted RBP8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 ALDH3B2P48448 385 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 DEFA6Q01524 100 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 LSAMPQ13449 338 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 MOGAT2Q3SYC2 334 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 ZNF773Q6PK81 442 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 MOB1BQ7L9L4 216 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 Q8N9W7 124 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 OR56B1Q8NGI3 324 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 FCGR1BQ92637 280 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 ZNF251Q9BRH9 671 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 PARP12Q9H0J9 701 aaKnown RBP8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 RBM38Q9H0Z9 239 aaKnown RBP8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 IFI27L2Q9H2X8 130 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 CHMP1AQ9HD42 196 aaPredicted RBP8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 Q9N2K0 584 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 TXNL4BQ9NX01 149 aaKnown RBP8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 ABRACLQ9P1F3 81 aa8.13□□□□□ -1.11
CCDC88C-206ENST00000553437 A0A087WXM4 84 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 TRIM64CA6NLI5 447 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 LINC01548A6NM66 108 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 RAB27BO00194 218 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 RGS11O94810 467 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 MOSP00540 346 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 IGHG2P01859 326 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 RAB3BP20337 219 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 MYL9P24844 172 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 RANBP1P43487 201 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 OR3A3P47888 321 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 F2RL1P55085 397 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 ZNF833PQ6ZTB9 187 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 SETD6Q8TBK2 473 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 IL1F10Q8WWZ1 152 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 NOL4LQ96MY1 436 aaPredicted RBP8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 S1PR3Q99500 378 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 NABP2Q9BQ15 211 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 ABCG5Q9H222 651 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 STUB1Q9UNE7 303 aa8.12□□□□□ -1.11
CCDC88C-206ENST00000553437 SAA2-SAA4A0A096LPE2 208 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 IGKV1-6A0A0C4DH72 117 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 TCRBV4S1A1TA0A5B7 111 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 NCBP2LA6PVI3 153 aaKnown RBP8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 ITGB1BP1O14713 200 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 ST8SIA5O15466 376 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 SCTP09683 121 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 SAA2P0DJI9 122 aaPredicted RBP8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 SLC2A2P11168 524 aaPredicted RBP8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms